View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12597_low_3 (Length: 722)

Name: NF12597_low_3
Description: NF12597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12597_low_3
NF12597_low_3
[»] chr6 (22 HSPs)
chr6 (1-635)||(31563223-31563834)
chr6 (4-340)||(33303757-33304093)
chr6 (109-293)||(33261922-33262109)
chr6 (4-281)||(9166082-9166358)
chr6 (109-356)||(33409231-33409476)
chr6 (2-315)||(33387462-33387771)
chr6 (109-356)||(33398319-33398564)
chr6 (109-239)||(28870679-28870811)
chr6 (638-714)||(31563867-31563943)
chr6 (109-222)||(33407756-33407872)
chr6 (109-220)||(33284987-33285101)
chr6 (109-219)||(33271219-33271332)
chr6 (2-174)||(33644949-33645121)
chr6 (114-244)||(33056932-33057062)
chr6 (376-452)||(33409063-33409139)
chr6 (109-239)||(33281091-33281224)
chr6 (109-222)||(33396806-33396922)
chr6 (374-452)||(33398153-33398231)
chr6 (2-47)||(33057135-33057180)
chr6 (5-48)||(33409537-33409580)
chr6 (2-47)||(28870572-28870617)
chr6 (530-568)||(677907-677945)
[»] scaffold0428 (3 HSPs)
scaffold0428 (110-297)||(5691-5881)
scaffold0428 (109-239)||(13028-13161)
scaffold0428 (3-47)||(5950-5994)
[»] chr2 (4 HSPs)
chr2 (109-297)||(17441405-17441584)
chr2 (131-222)||(17446954-17447048)
chr2 (530-582)||(27084336-27084388)
chr2 (5-38)||(17441301-17441334)
[»] scaffold1408 (2 HSPs)
scaffold1408 (110-239)||(3-135)
scaffold1408 (3-47)||(204-248)
[»] chr5 (3 HSPs)
chr5 (530-583)||(35017109-35017162)
chr5 (531-565)||(13287354-13287388)
chr5 (529-582)||(14873589-14873642)
[»] chr7 (1 HSPs)
chr7 (530-572)||(38134335-38134377)
[»] chr3 (1 HSPs)
chr3 (530-580)||(11610578-11610628)
[»] chr4 (1 HSPs)
chr4 (529-578)||(11596296-11596345)


Alignment Details
Target: chr6 (Bit Score: 401; Significance: 0; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 635
Target Start/End: Original strand, 31563223 - 31563834
Alignment:
Q  1 cacgaccaaatcaagtcacctatggataatctacttcccccgagagtcacgtcatgaatttcaaaaaatccatttcgacattttttcggctaaaatttca 100  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  31563223 cacgaccaaatcaagtcacctatggataatctacttccctcgagggtcacgtcatgaatttcgaaaaatccattttgacattttttcggctaaaatttca 31563322  T
Q  101 cctatgagggtgaagagttgcgggtatcgttgggtaggtaaacaagacctacaagagtttaatttaacgatgattcacggaaaatccttggctcggaagt 200  Q
    ||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||                 ||||||||||||||||||||||||    
T  31563323 cctatgagggtgaagagttgcggatatcgttgggtatgtaaacatgacctacaagagtt-----------------acggaaaatccttggctcggaagt 31563405  T
Q  201 gaaagattttggcaattgaagatgagacacaaccacaactgcaagcagaacaataatctttcatctcataagtcataactaattcacaaagaagaaacaa 300  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||    
T  31563406 gaaagaatttggcaattgaagatgagacacaaccacaactgcaagcagaacaataatctttcatctcataagtcataactaattcaca---aagaaacaa 31563502  T
Q  301 ctgattggatcacaagagggtcatgaagagtgtcaacctgaaatgtttggattttttaaagnnnnnnnnnnnngagtaaattatatgaggcacagacacg 400  Q
    ||||||||||||||||||||||||||||| | ||||| ||||||||||||| |||||||||            |||||||||||||||||||| ||||||    
T  31563503 ctgattggatcacaagagggtcatgaagaatatcaacatgaaatgtttgga-tttttaaag---tttttttttgagtaaattatatgaggcactgacacg 31563598  T
Q  401 gacacatgactcgacatgaatatattgacatgttaacactaatactaattt-tnnnnnnnntatgacgcaattatatgtgatgtgtcgtgtgtccgacac 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||| |||||||||||||    
T  31563599 gacacatgactcgacatgaatatattgacatgttaacactaatactaatttaaaaaaaaaaaatgacgcaattatatgtgatgtgttgtgtgtccgacac 31563698  T
Q  500 cgagacgacgttttatgtgtgaataacagcctatgaagcacatacactccgcagattaggcgtgtctcgatgttggacacgtgcgggtgtctgacacaga 599  Q
    |||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |    
T  31563699 cgagacaatgttttctgtgtgaataacagcctatgaagcacatacactccgcagattaggcgtgtctcgatgttggacacgcgcgggtgtctgacacaaa 31563798  T
Q  600 cacatgttacacatatgattacattcaattacgtca 635  Q
    ||||||||||||||||||||||||| ||||||||||    
T  31563799 cacatgttacacatatgattacattgaattacgtca 31563834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 4 - 340
Target Start/End: Complemental strand, 33304093 - 33303757
Alignment:
Q  4 gaccaaatcaagtcacctatggataatctacttcccccgagagtcacgtcatgaatttcaaaaaatccatttcgacattttttcggctaaa-atttcacc 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||   |  ||||||| |||||||||||||  | ||||||  || | || |||| |      
T  33304093 gaccaaatcaagtcacctatggataatctacttcccccgagagtcctatagtgaatttgaaaaaatccattttaatatttttgagggtgaagattttagt 33303994  T
Q  103 tatgagggtgaagagttgcgggtatcgttgggtaggtaaacaagacctacaagagtttaatttaacgatgat---tcacggaaaatccttggctcggaag 199  Q
    |  |||| ||||||||||||||||||| |||||| ||||| ||||||| ||||| || || ||||| |||||   ||| | ||| | ||||||| |||||    
T  33303993 ttggagg-tgaagagttgcgggtatcggtgggtatgtaaagaagacctgcaagaattcaacttaacaatgatgaatcaagaaaatttcttggctgggaag 33303895  T
Q  200 tgaaagattttggcaattgaagatgagacacaaccacaactgcaagcagaacaataatctttcatctcataagtcataactaattcacaaagaagaaaca 299  Q
    || |||| |||||||||||||||||||||||||||| ||| | ||  ||||||| |||| |||||||||  ||||||||  | |||||| ||||||||||    
T  33303894 tgcaagaatttggcaattgaagatgagacacaaccagaaccggaacaagaacaagaatcattcatctcaagagtcataa--acttcacagagaagaaaca 33303797  T
Q  300 actgattggatcacaagagggtcatgaagagtgtcaacctg 340  Q
    || || |||||||||||| ||| ||||||||| ||||||||    
T  33303796 acaga-tggatcacaagaaggtgatgaagagtctcaacctg 33303757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 109 - 293
Target Start/End: Complemental strand, 33262109 - 33261922
Alignment:
Q  109 ggtgaagagttgcgggtatcgttgggtaggtaaacaagacctacaagagtttaatttaacgatgat---tcacggaaaatccttggctcggaagtgaaag 205  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||| || ||||| |||||   ||| | |||||||||||||  ||| || |||    
T  33262109 ggtgaagagttgcgggtatcattgggtatgtaaacaagacctacaagagttcaacttaacaatgatgaatcatgaaaaatccttggcttcgaaatgtaag 33262010  T
Q  206 attttggcaattgaagatgagacacaaccacaactgcaagcagaacaataatctttcatctcataagtcataactaattcacaaagaa 293  Q
    ||||||||||||||||||||||||||||||||||  ||| |||||||| |||| |||| |||| |||||||||||| |||||| ||||    
T  33262009 attttggcaattgaagatgagacacaaccacaaccacaatcagaacaagaatcattcacctcacaagtcataactacttcacagagaa 33261922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 4 - 281
Target Start/End: Complemental strand, 9166358 - 9166082
Alignment:
Q  4 gaccaaatcaagtcacctatggataatctacttcccccgagagtcacgtcatgaatttcaaaaaatccatttcgacattttttcggctaaaatttcacct 103  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||     ||||||||  |||||||||||| |||||| ||  || | ||  ||    |    
T  9166358 gaccaaatccagtcacctatggataatctacctcccccgagagtcctacgatgaatttggaaaaatccattttgacattattcggggtgaaggtttggat 9166259  T
Q  104 atgagggtgaagagttgcgggtatcgttgggtaggtaaacaagacctacaagagtttaatttaacgatgattcacggaaaatccttggctcggaagtgaa 203  Q
    |||| |||||||| ||| || || ||||||||| |||||||||||||||||||||| || |||||||||| ||||| |||||| |||||||||| ||| |    
T  9166258 atgaaggtgaagacttgtggataccgttgggtatgtaaacaagacctacaagagttcaacttaacgatgaatcacgaaaaatcattggctcggacgtgca 9166159  T
Q  204 agattttggcaattgaagatgagacacaaccacaactgcaagcagaacaataatctttcatctcataagtcataacta 281  Q
    ||| |||||||||| | ||||||| ||| ||||||| | || |||||||| |||| ||| ||||||||||||| ||||    
T  9166158 agactttggcaatttaggatgagagacagccacaaccg-aaccagaacaagaatcattcgtctcataagtcatgacta 9166082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 109 - 356
Target Start/End: Complemental strand, 33409476 - 33409231
Alignment:
Q  109 ggtgaagagttgcgggtatcgttgggtaggtaaacaagacctacaagagtttaattt---aacgatgattcacggaaaatccttggctcggaagtgaaag 205  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||| |||| || ||   || ||||| ||| | ||| |||||||||| |||||| |||    
T  33409476 ggtgaaaagttgcgggtatcgttgggtatgtaaacaagacctacaaaagttcaacttcacaatgatgaatcatgaaaattccttggctcagaagtgtaag 33409377  T
Q  206 attttggcaattgaagatgagacacaaccacaactgcaagcagaacaataatctttcatctcataagtcataactaattc--acaaagaagaaacaactg 303  Q
    ||| ||||||||||||  ||||||||||||||||      |||||||| |||| ||||||||| |||||||||||| |||  | |||||||||||||| |    
T  33409376 attatggcaattgaaggcgagacacaaccacaac------cagaacaagaatcattcatctcacaagtcataactacttcgaagaaagaagaaacaacag 33409283  T
Q  304 attggatcacaagagggtcatgaagagtgtcaacctgaaatgtttggattttt 356  Q
    | |||||||||||| ||||| ||||||| ||||||| | | ||||||||||||    
T  33409282 a-tggatcacaagaaggtcaagaagagtttcaacctaacacgtttggattttt 33409231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 2 - 315
Target Start/End: Complemental strand, 33387771 - 33387462
Alignment:
Q  2 acgaccaaatcaagtcacctatggataatctacttcccccgagagtcacgtcatgaatttcaaaaaatccatttcgacattttttcggctaaaatttcac 101  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||     ||||||||  ||| |||  ||| |||||||||  ||   ||  ||       
T  33387771 acgaccaaatcaagtcacctatggataatctacttcccacgagagtcctcggatgaatttggaaatatctgttttgacatttttaaggggcaagctttgg 33387672  T
Q  102 ctatgagggtgaagagttgcgggtatcgttgggtaggtaaacaagacctacaagagtttaatttaacgatgat---tcacggaaaatccttggctcggaa 198  Q
     ||||  |||||||||||||||||||||||||||| ||||||||||||||||||| || || ||| | |||||   ||||| ||| |||||||||| |||    
T  33387671 gtatggaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagaattcaacttaccaatgataaatcacgaaaattccttggctccgaa 33387572  T
Q  199 gtgaaagattttggcaattgaagatgagacacaaccacaactgcaagcagaacaataatctttcatctcataagtcataactaattcacaaagaagaaac 298  Q
    ||| |||||||||||||||||||||| |||||||| |||||      || ||||| |||| ||||| ||| |||||||||||| | |||  |||||||||    
T  33387571 gtgtaagattttggcaattgaagatgggacacaactacaac------cacaacaagaatcattcatgtcacaagtcataactagtacaccgagaagaaac 33387478  T
Q  299 aactgattggatcacaa 315  Q
    ||| || ||||||||||    
T  33387477 aacaga-tggatcacaa 33387462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 109 - 356
Target Start/End: Complemental strand, 33398564 - 33398319
Alignment:
Q  109 ggtgaagagttgcgggtatcgttgggtaggtaaacaagacctacaagagtttaattt---aacgatgattcacggaaaatccttggctcggaagtgaaag 205  Q
    |||||||||||||||||||||||||||| ||||||||||||||| | |||| || ||   || ||||| ||| | ||| ||||| ||||  ||||| |||    
T  33398564 ggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacgaaagttgaacttcacaatgatgaatcatgaaaattcctttgctcaaaagtgtaag 33398465  T
Q  206 attttggcaattgaagatgagacacaaccacaactgcaagcagaacaataatctttcatctcataagtcataactaattc--acaaagaagaaacaactg 303  Q
    ||| ||||||||||||  ||||||||||||||||      |||||||| |||| ||||||||| |||||||||||| |||  | || ||||||||||| |    
T  33398464 attatggcaattgaaggcgagacacaaccacaac------cagaacaagaatcattcatctcacaagtcataactacttcgaagaaggaagaaacaacag 33398371  T
Q  304 attggatcacaagagggtcatgaagagtgtcaacctgaaatgtttggattttt 356  Q
    | |||||||||||| ||||| ||||||| ||||||| | | ||||||||||||    
T  33398370 a-tggatcacaagaaggtcacgaagagtttcaacctaacacgtttggattttt 33398319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 109 - 239
Target Start/End: Original strand, 28870679 - 28870811
Alignment:
Q  109 ggtgaagagttgcgggtatcgttgggtaggtaaacaagacctacaagagtttaatttaacgatgat--tcacggaaaatccttggctcggaagtgaaaga 206  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||| |||||   |||  ||| |||||||||| |||||  ||||    
T  28870679 ggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagagttcaacttaacaatgatgaacacaaaaattccttggctcagaagttcaaga 28870778  T
Q  207 ttttggcaattgaagatgagacacaaccacaac 239  Q
    |||||| ||||||||||| ||||||||| ||||    
T  28870779 ttttggaaattgaagatgggacacaaccgcaac 28870811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 638 - 714
Target Start/End: Original strand, 31563867 - 31563943
Alignment:
Q  638 cagtgtaagtgtcgtgtttgtgtctgtgttaataatggaaaggaacaagttgcagctgcaacagagtcaaacagtga 714  Q
    ||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||    
T  31563867 cagtgtacgtgtcgtgtttgtgtctgtgttaataatagaaaggaagaagttgcagctgcaacagaatcaaacagtga 31563943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 33407872 - 33407756
Alignment:
Q  109 ggtgaagagttgcgggtatcgttgggtaggtaaacaagacctacaagagtttaatttaac---gatgattcacggaaaatccttggctcggaagtgaaag 205  Q
    ||||||||| ||||||||| |||||||| ||||||||||||||||| |||| || |||||   ||||| ||||| ||| |||||||||| |||||| |||    
T  33407872 ggtgaagagctgcgggtatagttgggtatgtaaacaagacctacaaaagttcaacttaacaatgatgaatcacgaaaattccttggctcagaagtgcaag 33407773  T
Q  206 attttggcaattgaaga 222  Q
    ||||||| |||||||||    
T  33407772 attttggaaattgaaga 33407756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 109 - 220
Target Start/End: Complemental strand, 33285101 - 33284987
Alignment:
Q  109 ggtgaagagttgcgggtatcgttgggtaggtaaacaagacctacaagagtttaatttaac---gatgattcacggaaaatccttggctcggaagtgaaag 205  Q
    |||||| ||||| || |||||||||||| |||||||||||||||||||||| ||||||||   ||||| ||||  || ||||||||||| |||||| |||    
T  33285101 ggtgaacagttgtggatatcgttgggtatgtaaacaagacctacaagagttcaatttaacaatgatgaatcacaaaatatccttggctccgaagtgtaag 33285002  T
Q  206 attttggcaattgaa 220  Q
    ||| |||||||||||    
T  33285001 attatggcaattgaa 33284987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 109 - 219
Target Start/End: Complemental strand, 33271332 - 33271219
Alignment:
Q  109 ggtgaagagttgcgggtatcgttgggtaggtaaacaagacctacaagagtttaatttaac---gatgattcacggaaaatccttggctcggaagtgaaag 205  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||||| ||| ||||   | ||| ||||| ||| ||||||||||  || || |||    
T  33271332 ggtgaagagttgcgggtatcgttggatatgtaaacaagacctacaagagttcaatataacaatgctgaatcacgaaaattccttggctccaaaatgtaag 33271233  T
Q  206 attttggcaattga 219  Q
    ||||||||||||||    
T  33271232 attttggcaattga 33271219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 2 - 174
Target Start/End: Original strand, 33644949 - 33645121
Alignment:
Q  2 acgaccaaatcaagtcacctatggataatctacttcccccgagagtcacgtcatgaatttcaaaaaatccatttcgacattttttcggctaaaatttcac 101  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||   | ||||||||  || |||| |||| |||||||||  |    ||  |        
T  33644949 acgaccaaatcaagtcacctatggataatctacttccctcgagattcctataatgaatttggaagaatctattttgacatttttgagagggaaggtctgg 33645048  T
Q  102 ctatgagggtgaagagttgcgggtatcgttgggtaggtaaacaagacctacaagagtttaatttaacgatgat 174  Q
     ||||| |||||||||||| ||||||||||||||| ||||||||||||||||| |||| || ||||| |||||    
T  33645049 gtatgaaggtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgat 33645121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 114 - 244
Target Start/End: Complemental strand, 33057062 - 33056932
Alignment:
Q  114 agagttgcgggtatcgttgggtaggtaaacaagacctacaagagtttaatttaacgatgattcacggaaaatccttggctcggaagtgaaagattttggc 213  Q
    |||||||||| |||||||||||| ||||||||||  ||||||| || |||||||  |||| ||||  ||| |||||  |||  ||||| || |||||| |    
T  33057062 agagttgcggttatcgttgggtatgtaaacaagatatacaagaattcaatttaatcatgaatcacaaaaattccttaactccaaagtgcaaaattttgac 33056963  T
Q  214 aattgaagatgagacacaaccacaactgcaa 244  Q
    |||||||||||||||||||||| ||| ||||    
T  33056962 aattgaagatgagacacaaccagaaccgcaa 33056932  T

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Target: chr6; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 376 - 452
Target Start/End: Complemental strand, 33409139 - 33409063
Alignment:
Q  376 gtaaattatatgaggcacagacacggacacatgactcgacatgaatatattgacatgttaacactaatactaatttt 452  Q
    |||||||||||||  ||| ||||||||||||| ||||||||  |||||||||||||||| |||| ||||||||||||    
T  33409139 gtaaattatatgaaacactgacacggacacataactcgacacaaatatattgacatgttgacaccaatactaatttt 33409063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 239
Target Start/End: Complemental strand, 33281224 - 33281091
Alignment:
Q  109 ggtgaagagttgcgggtatcgttgggtaggtaaacaagacctacaagagtttaatttaacgatgat---tcacggaaaatccttggctcggaagtgaaag 205  Q
    |||||||||||||| | |||||||  || |||||||||||||||||||||| | |||||| || ||   ||| | |   |||||||||| |||||| |||    
T  33281224 ggtgaagagttgcgtgcatcgttgaatatgtaaacaagacctacaagagttcagtttaacaataatgaatcatgaagcttccttggctcagaagtgcaag 33281125  T
Q  206 attttggcaattgaagatgagacacaaccacaac 239  Q
    ||||||| ||||||||||| ||||||||| ||||    
T  33281124 attttggaaattgaagatgggacacaaccgcaac 33281091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 33396922 - 33396806
Alignment:
Q  109 ggtgaagagttgcgggtatcgttgggtaggtaaacaagacctacaagagtttaatttaac---gatgattcacggaaaatccttggctcggaagtgaaag 205  Q
    ||||||||| ||| ||||| |||||||| ||||||||||||||||| |||| || |||||   ||||| ||| | ||| ||||||| || |||||| |||    
T  33396922 ggtgaagagctgcaggtatagttgggtatgtaaacaagacctacaaaagttcaacttaacaatgatgaatcatgaaaattccttggttcagaagtgcaag 33396823  T
Q  206 attttggcaattgaaga 222  Q
    ||||||| |||||||||    
T  33396822 attttggaaattgaaga 33396806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 374 - 452
Target Start/End: Complemental strand, 33398231 - 33398153
Alignment:
Q  374 gagtaaattatatgaggcacagacacggacacatgactcgacatgaatatattgacatgttaacactaatactaatttt 452  Q
    |||||||||||||||  ||| |||||||||| || ||||||||  |||||||||||||||| |||| ||||||||||||    
T  33398231 gagtaaattatatgaaacactgacacggacatataactcgacacaaatatattgacatgttgacaccaatactaatttt 33398153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 33057180 - 33057135
Alignment:
Q  2 acgaccaaatcaagtcacctatggataatctacttcccccgagagt 47  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||    
T  33057180 acgaccaaatcaagtcacctatggattatctacttaccccgagagt 33057135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 33409580 - 33409537
Alignment:
Q  5 accaaatcaagtcacctatggataatctacttcccccgagagtc 48  Q
    ||||||||||||||||||||| || |||||||||||||||||||    
T  33409580 accaaatcaagtcacctatggctagtctacttcccccgagagtc 33409537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 28870572 - 28870617
Alignment:
Q  2 acgaccaaatcaagtcacctatggataatctacttcccccgagagt 47  Q
    |||||||||||||||||||||||  || ||||||||||||||||||    
T  28870572 acgaccaaatcaagtcacctatgactagtctacttcccccgagagt 28870617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 530 - 568
Target Start/End: Complemental strand, 677945 - 677907
Alignment:
Q  530 ctatgaagcacatacactccgcagattaggcgtgtctcg 568  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  677945 ctatgaagcacatacactcctcagattaggagtgtctcg 677907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 89; Significance: 2e-42; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 110 - 297
Target Start/End: Complemental strand, 5881 - 5691
Alignment:
Q  110 gtgaagagttgcgggtatcgttgggtaggtaaacaagacctacaagagtttaatttaacgatgat---tcacggaaaatccttggctcggaagtgaaaga 206  Q
    |||||| |||||||||||||||||||| |||||||| || |||||||||| || ||||| |||||   ||| | |||||||||||||  ||| || ||||    
T  5881 gtgaagtgttgcgggtatcgttgggtatgtaaacaaaacttacaagagttcaacttaacaatgatgaatcatgaaaaatccttggcttcgaaatgtaaga 5782  T
Q  207 ttttggcaattgaagatgagacacaaccacaactgcaagcagaacaataatctttcatctcataagtcataactaattcacaaagaagaaa 297  Q
    |||||||||||||||||||||||||||||||||  ||| |||||||| |||| |||| |||| |||||||||||| |||||| ||||||||    
T  5781 ttttggcaattgaagatgagacacaaccacaaccacaatcagaacaagaatcattcacctcacaagtcataactacttcacagagaagaaa 5691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 239
Target Start/End: Original strand, 13028 - 13161
Alignment:
Q  109 ggtgaagagttgcgggtatcgttgggtaggtaaacaagacctacaagagtttaatttaacgatgat---tcacggaaaatccttggctcggaagtgaaag 205  Q
    |||||||||||||| | |||||||  || |||||||||||||||||||||| | |||||| || ||   ||| | |   |||||||||| |||||| |||    
T  13028 ggtgaagagttgcgtgcatcgttgaatatgtaaacaagacctacaagagttcagtttaacaataatgaatcatgaagcttccttggctcagaagtgcaag 13127  T
Q  206 attttggcaattgaagatgagacacaaccacaac 239  Q
    ||||||| ||||||||||| ||||||||| ||||    
T  13128 attttggaaattgaagatgggacacaaccgcaac 13161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 5994 - 5950
Alignment:
Q  3 cgaccaaatcaagtcacctatggataatctacttcccccgagagt 47  Q
    ||||||||||||||||||||||| || ||||||| ||||||||||    
T  5994 cgaccaaatcaagtcacctatggctagtctactttccccgagagt 5950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 2e-42; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 109 - 297
Target Start/End: Original strand, 17441405 - 17441584
Alignment:
Q  109 ggtgaagagttgcgggtatcgttgggtaggtaaacaagacctacaagagtttaatttaac---gatgattcacggaaaatccttggctcggaagtgaaag 205  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||   ||||| ||||| |||| ||||||||| |||||| |||    
T  17441405 ggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagagttcaacttaacaatgatgaatcacgaaaaaaccttggctcagaagtgcaag 17441504  T
Q  206 attttggcaattgaagatgagacacaaccacaactgcaagcagaacaataatctttcatctcataagtcataactaattcacaaagaagaaa 297  Q
    ||||||||||||||||||||||||||||            |||||||| |||| ||||||||| |||||||||||| |||||||||||||||    
T  17441505 attttggcaattgaagatgagacacaac------------cagaacaagaatcattcatctcacaagtcataactacttcacaaagaagaaa 17441584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 17446954 - 17447048
Alignment:
Q  131 tgggtaggtaaacaagacctacaagagtttaatttaac---gatgattcacggaaaatccttggctcggaagtgaaagattttggcaattgaaga 222  Q
    |||||| |||||||||||||||||||||| || |||||   | ||| | ||| ||| |||||||||| |||||| |||||||| | |||||||||    
T  17446954 tgggtatgtaaacaagacctacaagagttcaacttaacaatgttgaataacgaaaattccttggctcagaagtgcaagatttttgaaattgaaga 17447048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 530 - 582
Target Start/End: Complemental strand, 27084388 - 27084336
Alignment:
Q  530 ctatgaagcacatacactccgcagattaggcgtgtctcgatgttggacacgtg 582  Q
    |||||||||| | ||||||| | |||||||||||||||| |||||||||||||    
T  27084388 ctatgaagcagagacactcctccgattaggcgtgtctcggtgttggacacgtg 27084336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 17441301 - 17441334
Alignment:
Q  5 accaaatcaagtcacctatggataatctacttcc 38  Q
    ||||||||||||||| ||||||||||||||||||    
T  17441301 accaaatcaagtcacatatggataatctacttcc 17441334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 110 - 239
Target Start/End: Complemental strand, 135 - 3
Alignment:
Q  110 gtgaagagttgcgggtatcgttgggtaggtaaacaagacctacaagagtttaatttaacgatgat---tcacggaaaatccttggctcggaagtgaaaga 206  Q
    |||||| |||||||||||||||||||| |||||||| || |||||||||| || ||||| |||||   ||| | |||||||||||||  ||| || ||||    
T  135 gtgaagtgttgcgggtatcgttgggtatgtaaacaaaacttacaagagttcaacttaacaatgatgaatcatgaaaaatccttggcttcgaaatgtaaga 36  T
Q  207 ttttggcaattgaagatgagacacaaccacaac 239  Q
    |||||||||||||||||||||||||||||||||    
T  35 ttttggcaattgaagatgagacacaaccacaac 3  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 248 - 204
Alignment:
Q  3 cgaccaaatcaagtcacctatggataatctacttcccccgagagt 47  Q
    ||||||||||||||||||||||| || ||||||| ||||||||||    
T  248 cgaccaaatcaagtcacctatggctagtctactttccccgagagt 204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 530 - 583
Target Start/End: Complemental strand, 35017162 - 35017109
Alignment:
Q  530 ctatgaagcacatacactccgcagattaggcgtgtctcgatgttggacacgtgc 583  Q
    |||||||||||  ||||||| | ||||||||||||| |||||||||||||||||    
T  35017162 ctatgaagcacggacactcctcggattaggcgtgtcccgatgttggacacgtgc 35017109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 531 - 565
Target Start/End: Original strand, 13287354 - 13287388
Alignment:
Q  531 tatgaagcacatacactccgcagattaggcgtgtc 565  Q
    ||||||||||||||||||| |||||||||||||||    
T  13287354 tatgaagcacatacactcctcagattaggcgtgtc 13287388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 529 - 582
Target Start/End: Complemental strand, 14873642 - 14873589
Alignment:
Q  529 cctatgaagcacatacactccgcagattaggcgtgtctcgatgttggacacgtg 582  Q
    ||||||||||||  ||||||| | ||||||||||||| || |||||||||||||    
T  14873642 cctatgaagcacggacactcctcggattaggcgtgtcccggtgttggacacgtg 14873589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 530 - 572
Target Start/End: Original strand, 38134335 - 38134377
Alignment:
Q  530 ctatgaagcacatacactccgcagattaggcgtgtctcgatgt 572  Q
    |||||||||||||||||||| | ||||||||||||| ||||||    
T  38134335 ctatgaagcacatacactcctcggattaggcgtgtcccgatgt 38134377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 530 - 580
Target Start/End: Complemental strand, 11610628 - 11610578
Alignment:
Q  530 ctatgaagcacatacactccgcagattaggcgtgtctcgatgttggacacg 580  Q
    |||||||||||  ||||||| ||||||||||||||| |||||| |||||||    
T  11610628 ctatgaagcacggacactcctcagattaggcgtgtcccgatgtcggacacg 11610578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 529 - 578
Target Start/End: Original strand, 11596296 - 11596345
Alignment:
Q  529 cctatgaagcacatacactccgcagattaggcgtgtctcgatgttggaca 578  Q
    ||||||||||||  ||||||| ||||||||||||||| |||||| |||||    
T  11596296 cctatgaagcacggacactcctcagattaggcgtgtcccgatgtcggaca 11596345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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