View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12597_low_30 (Length: 275)

Name: NF12597_low_30
Description: NF12597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12597_low_30
NF12597_low_30
[»] chr1 (5 HSPs)
chr1 (14-258)||(15815181-15815423)
chr1 (14-49)||(30710550-30710585)
chr1 (15-50)||(30718823-30718858)
chr1 (14-50)||(30689780-30689816)
chr1 (14-49)||(30698667-30698702)
[»] chr8 (1 HSPs)
chr8 (55-156)||(27931740-27931840)
[»] chr6 (3 HSPs)
chr6 (73-191)||(22884799-22884915)
chr6 (73-191)||(22902757-22902873)
chr6 (120-165)||(10290910-10290955)
[»] scaffold0054 (1 HSPs)
scaffold0054 (73-191)||(8316-8432)
[»] scaffold0328 (1 HSPs)
scaffold0328 (55-236)||(3548-3731)
[»] chr3 (1 HSPs)
chr3 (120-156)||(2154357-2154393)


Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 14 - 258
Target Start/End: Original strand, 15815181 - 15815423
Alignment:
Q  14 cagagatacaacaagaggaggaagaagggtttggctttatgtgcttcttgaagattatggctgaagactctactggatcagatgtatttgtttagcccga 113  Q
    |||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15815181 cagagatacagcaagaggaggaagaagggtttggctttatg--cttcttgaagattatggctgaagactctactggatcagatgtatttgtttagcccga 15815278  T
Q  114 tgaattatcaagcccatgcattttctggctatataaaggaagatccaaacctgtgagaagactactgaagtcgtaattaataaacaatcttaatagggtt 213  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  15815279 tgaattatcaagcccatgcattttctggctctataaaggaagacccaaacctgcgagaagactactgaagtcgtaattaataaacaatcttaatagggtt 15815378  T
Q  214 gtgtatgtccttgttatttgtgagtcactatatatctccttgatg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  15815379 gtgtatgtccttgttatttgtgagtcactatatatctccttgatg 15815423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 30710585 - 30710550
Alignment:
Q  14 cagagatacaacaagaggaggaagaagggtttggct 49  Q
    ||||||||||||||||||||||||||||||||||||    
T  30710585 cagagatacaacaagaggaggaagaagggtttggct 30710550  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 30718858 - 30718823
Alignment:
Q  15 agagatacaacaagaggaggaagaagggtttggctt 50  Q
    ||||||||||||||||||||||||||||||||||||    
T  30718858 agagatacaacaagaggaggaagaagggtttggctt 30718823  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 30689816 - 30689780
Alignment:
Q  14 cagagatacaacaagaggaggaagaagggtttggctt 50  Q
    |||||| ||||||||||||||||||||||||||||||    
T  30689816 cagagacacaacaagaggaggaagaagggtttggctt 30689780  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 30698702 - 30698667
Alignment:
Q  14 cagagatacaacaagaggaggaagaagggtttggct 49  Q
    ||||||||||||||||||||||||||| ||||||||    
T  30698702 cagagatacaacaagaggaggaagaagagtttggct 30698667  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 156
Target Start/End: Original strand, 27931740 - 27931840
Alignment:
Q  55 tgcttcttgaagattatggctgaagactctactggatcagatgtatttgtttagcccga-tgaattatcaagcccatgcattttctggctatataaagga 153  Q
    ||||||| ||||||| | | ||||||||||| |||||||| |||||| ||||||||||| ||||  | |||||||||||||| |||||||||||||||||    
T  27931740 tgcttctagaagattgtagttgaagactctattggatcagctgtatt-gtttagcccgagtgaagaa-caagcccatgcattctctggctatataaagga 27931837  T
Q  154 aga 156  Q
    |||    
T  27931838 aga 27931840  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 191
Target Start/End: Original strand, 22884799 - 22884915
Alignment:
Q  73 gctgaagactctactggatcagatgtatttgtttagcccgatgaattatcaagcccatgcattttctggctatataaaggaagatccaaacctgtgagaa 172  Q
    ||||||||| ||| |||||||  |||||| |||||||||||   || |||||||||||||| | |||| |||||||||||||||  |||||||   ||||    
T  22884799 gctgaagacactattggatcaactgtatt-gtttagcccgacagatgatcaagcccatgcactctctgtctatataaaggaagactcaaacct-aaagaa 22884896  T
Q  173 gactactgaagtcgtaatt 191  Q
    |||||||||||||| ||||    
T  22884897 gactactgaagtcgcaatt 22884915  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 191
Target Start/End: Original strand, 22902757 - 22902873
Alignment:
Q  73 gctgaagactctactggatcagatgtatttgtttagcccgatgaattatcaagcccatgcattttctggctatataaaggaagatccaaacctgtgagaa 172  Q
    ||||||||| ||| |||||||  |||||| |||||||||||   || ||||||| |||||| | |||| |||||||||||||||  |||||||   ||||    
T  22902757 gctgaagacactattggatcaactgtatt-gtttagcccgacagatgatcaagcacatgcactctctgtctatataaaggaagactcaaacct-aaagaa 22902854  T
Q  173 gactactgaagtcgtaatt 191  Q
    |||||||||||||||||||    
T  22902855 gactactgaagtcgtaatt 22902873  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 165
Target Start/End: Complemental strand, 10290955 - 10290910
Alignment:
Q  120 atcaagcccatgcattttctggctatataaaggaagatccaaacct 165  Q
    |||||||||||||||| |||| |||||||||||||||  |||||||    
T  10290955 atcaagcccatgcattctctgactatataaaggaagactcaaacct 10290910  T

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Target: scaffold0054 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 191
Target Start/End: Original strand, 8316 - 8432
Alignment:
Q  73 gctgaagactctactggatcagatgtatttgtttagcccgatgaattatcaagcccatgcattttctggctatataaaggaagatccaaacctgtgagaa 172  Q
    ||||||||| ||| |||||||  |||||| |||||||||||   || ||||||| |||||| | |||| |||||||||||||||  |||||||   ||||    
T  8316 gctgaagacactattggatcaactgtatt-gtttagcccgacagatgatcaagctcatgcactctctgtctatataaaggaagactcaaacct-aaagaa 8413  T
Q  173 gactactgaagtcgtaatt 191  Q
    |||||||||||||| ||||    
T  8414 gactactgaagtcgcaatt 8432  T

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Target: scaffold0328 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 236
Target Start/End: Original strand, 3548 - 3731
Alignment:
Q  55 tgcttcttgaagattatggctgaagactctactggatcagatgtatttgtttagcccgatgaattatcaagcccatgcattttctggctatataaaggaa 154  Q
    ||||||| ||||||| | ||| |||||| |  |||||||| | | ||| |||||||||||  || ||||| || |||| || ||||| ||||||||||||    
T  3548 tgcttctagaagattgtagcttaagacttttttggatcagctattttt-tttagcccgattgatgatcaaacctatgccttctctggatatataaaggaa 3646  T
Q  155 gatccaaacctgtgagaagactactgaagtcgtaattaat-aaacaatcttaatagggtt--gtgtatgtccttgttatttgtga 236  Q
        |||||||  | |||||| ||||||||||| ||| |  ||| ||||||| |||||||  |||| ||||||||||||||||||    
T  3647 ccctcaaacctacgtgaagaccactgaagtcgtcattgaggaaagaatcttattagggttttgtgtttgtccttgttatttgtga 3731  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 2154357 - 2154393
Alignment:
Q  120 atcaagcccatgcattttctggctatataaaggaaga 156  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  2154357 atcaagcccatgcattctctagctatataaaggaaga 2154393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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