View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12597_low_34 (Length: 269)
Name: NF12597_low_34
Description: NF12597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12597_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 16492672 - 16492424
Alignment:
| Q |
1 |
ttgacaaatgtaatacagaaattttaagggagaataatgacacaaatattaagtacaaacaacaaaggtttctaatcgtaattccgatcacagcgacaac |
100 |
Q |
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| T |
16492672 |
ttgacaaatgtaatacagaaattttaagggagaataatgacacaaatattaagtacaaacaacaaaggtttctaatcgtaattccgatcacagcgacaac |
16492573 |
T |
|
| Q |
101 |
aacagcaacgacaaaaacacaaagttttctaattgtaattccggcaagatgacacaaacctcctcctcattggcaacctctaaaatcgagttttatcctt |
200 |
Q |
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|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
16492572 |
aacagcaacgacaaaa-cacaaatttttctaattgtaattccggcaagatgacacaaacctcctcctcatcggcaacctccaaaatcgagttttatcctt |
16492474 |
T |
|
| Q |
201 |
ccctcgctgtttcaaactttaataatcatattcctattgttcttgagatg |
250 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
16492473 |
ccctcgctgtttcaaactttaagaatcacattcctattgttcttgagatg |
16492424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 250
Target Start/End: Original strand, 31338201 - 31338365
Alignment:
| Q |
86 |
gatcacagcgacaacaacagcaacgacaaaaacacaaagttttctaattgtaattccggcaagatgacacaaacctcctcctcattggcaacctctaaaa |
185 |
Q |
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|||||||||||||| | |||||||||||||||||| || | | | | | ||| ||| ||||||||||| |||||||| |||| | || || |||| |
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| T |
31338201 |
gatcacagcgacaatagcagcaacgacaaaaacaccaacactgccactccttattacggtaagatgacacacacctcctcttcatcgacatattccaaaa |
31338300 |
T |
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| Q |
186 |
tcgagttttatccttccctcgctgtttcaaactttaataatcatattcctattgttcttgagatg |
250 |
Q |
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| T |
31338301 |
caaagtttcatcctgccttcgctgtttccaacattaagaatcacattcatattgttcttgagatg |
31338365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 4863373 - 4863318
Alignment:
| Q |
195 |
atccttccctcgctgtttcaaactttaataatcatattcctattgttcttgagatg |
250 |
Q |
| |
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||||| || |||||||||| ||| |||| ||||| ||||||||||||||||||||| |
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| T |
4863373 |
atcctgccttcgctgtttccaacattaagaatcacattcctattgttcttgagatg |
4863318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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