View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12597_low_36 (Length: 264)

Name: NF12597_low_36
Description: NF12597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12597_low_36
NF12597_low_36
[»] chr6 (9 HSPs)
chr6 (18-254)||(31563010-31563246)
chr6 (22-125)||(33285309-33285412)
chr6 (18-130)||(33271514-33271617)
chr6 (18-125)||(33304199-33304306)
chr6 (18-117)||(33387877-33387976)
chr6 (66-130)||(9166471-9166535)
chr6 (18-117)||(33644726-33644825)
chr6 (19-109)||(28870356-28870446)
chr6 (69-120)||(33358653-33358704)
[»] chr4 (2 HSPs)
chr4 (22-119)||(31499245-31499342)
chr4 (18-119)||(31479194-31479295)
[»] scaffold1408 (1 HSPs)
scaffold1408 (18-135)||(349-466)
[»] scaffold0428 (1 HSPs)
scaffold0428 (18-135)||(6095-6212)
[»] chr2 (1 HSPs)
chr2 (81-130)||(17441111-17441160)


Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 31563010 - 31563246
Alignment:
Q  18 caacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaatatcaatgataccattggctttgtatgttgtgcagtattt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31563010 caacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaatatcaatgatatcattggctttgtatgttgtgcagtattt 31563109  T
Q  118 tccgtggcgcctccagattcaatattcacaccatgggatccaccgtgggtcagaattacgggtataagtaatatcaaattgaaaatcccagtaattatca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  31563110 tccgtggcgcctccagattcaatattcacaccatgggatccaccgtgggtcagaattacgggtataagtgatatcaaattgaaaatccctgtaattatca 31563209  T
Q  218 atggaagttttcgcacgaccaaatcaagtcacctatg 254  Q
    |||||||||||||||||||||||||||||||||||||    
T  31563210 atggaagttttcgcacgaccaaatcaagtcacctatg 31563246  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 125
Target Start/End: Complemental strand, 33285412 - 33285309
Alignment:
Q  22 aatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaatatcaatgataccattggctttgtatgttgtgcagtattttccg 121  Q
    ||||| ||| |||||  |||||||||||||||    ||||||  |||||||||||||| |||| ||| |||||||||||||||||||||||| |||||||    
T  33285412 aatcagagcgtgggtagttcaataccaatagacagatctcctattatgcatgacaataacaataatatcattggctttgtatgttgtgcagtgttttccg 33285313  T
Q  122 tggc 125  Q
    ||||    
T  33285312 tggc 33285309  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 33271617 - 33271514
Alignment:
Q  18 caacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaatatcaatgataccattggctttgtatgttgtgcagtattt 117  Q
    ||||||||| |||||||||||||| ||||||||||| |||||| || |||||||||         || ||||||||||||||||||| |||| |||||||    
T  33271617 caacaatcagagcatgggtgattcgataccaatagaattctcttctgctatgcatg---------ataataccattggctttgtatgctgtgtagtattt 33271527  T
Q  118 tccgtggcgcctc 130  Q
    |||||||| ||||    
T  33271526 tccgtggcacctc 33271514  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 33304306 - 33304199
Alignment:
Q  18 caacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaatatcaatgataccattggctttgtatgttgtgcagtattt 117  Q
    ||||||| | ||| ||||||||||||||| ||||||    ||||||  |||||||||||||| |||| ||| |||||||||| |||||||||| ||||||    
T  33304306 caacaataagagcgtgggtgattcaatacaaatagaccgatctcctattatgcatgacaataacaattatatcattggctttctatgttgtgcggtattt 33304207  T
Q  118 tccgtggc 125  Q
    ||| ||||    
T  33304206 tccatggc 33304199  T

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Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 33387976 - 33387877
Alignment:
Q  18 caacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaatatcaatgataccattggctttgtatgttgtgcagtattt 117  Q
    ||||||||| ||||||||||||||||||| ||||||    |  |||  |||||||||||||| |||| ||| |||||||||| |||||||||||||||||    
T  33387976 caacaatcagagcatgggtgattcaatactaatagacaaattgcctattatgcatgacaataacaataatatcattggctttctatgttgtgcagtattt 33387877  T

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Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 9166535 - 9166471
Alignment:
Q  66 tatgcatgacaatatcaatgataccattggctttgtatgttgtgcagtattttccgtggcgcctc 130  Q
    |||||||||||||| |||| ||| ||||||||||||||||||||||||||| ||| |||| ||||    
T  9166535 tatgcatgacaataacaataatatcattggctttgtatgttgtgcagtattctccatggcacctc 9166471  T

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Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 33644726 - 33644825
Alignment:
Q  18 caacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaatatcaatgataccattggctttgtatgttgtgcagtattt 117  Q
    ||||||||| ||  ||||| ||||||||| ||||||    ||||||  |||||||||||||| |||| ||| |||||| |||||||||||||||||||||    
T  33644726 caacaatcaaagtgtgggttattcaatacaaatagacgaatctcctattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtattt 33644825  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 28870356 - 28870446
Alignment:
Q  19 aacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaatatcaatgataccattggctttgtatgttgtg 109  Q
    |||||||| |||||||||| |||||||| ||||||    ||||||  |||  ||||||||| |||| ||| ||||||||||||||||||||    
T  28870356 aacaatcagagcatgggtggttcaatacaaatagacgaatctcctattataaatgacaataacaataatatcattggctttgtatgttgtg 28870446  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 120
Target Start/End: Complemental strand, 33358704 - 33358653
Alignment:
Q  69 gcatgacaatatcaatgataccattggctttgtatgttgtgcagtattttcc 120  Q
    ||||||||||| |||| ||  |||||| ||||||||||||||||||||||||    
T  33358704 gcatgacaataacaataatgtcattggttttgtatgttgtgcagtattttcc 33358653  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 31499245 - 31499342
Alignment:
Q  22 aatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaatatcaatgataccattggctttgtatgttgtgcagtattttc 119  Q
    ||||| |||| |||||||||||||| |||||| |  |||||   ||| |||||||||| |||| ||| ||||||||||||||||||||||||||||||    
T  31499245 aatcagagcaagggtgattcaatacgaatagactcatctcccattatccatgacaataacaataatatcattggctttgtatgttgtgcagtattttc 31499342  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 31479194 - 31479295
Alignment:
Q  18 caacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaatatcaatgataccattggctttgtatgttgtgcagtattt 117  Q
    ||||||||| |||| |||| ||| ||||| |||||| |  |||||   |||||| ||||||| |||| ||| | |||||| ||||||||||| |||||||    
T  31479194 caacaatcagagcaagggtaatttaatacgaatagattcttctccgattatgcacgacaataacaataatatcgttggctgtgtatgttgtgtagtattt 31479293  T
Q  118 tc 119  Q
    ||    
T  31479294 tc 31479295  T

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Target: scaffold1408 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 466 - 349
Alignment:
Q  18 caacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaatatcaatgataccattggctttgtatgttgtgcagtattt 117  Q
    ||||||||| |||||||||| |||||||| ||||||    ||||||  ||| ||||||||||  ||| ||| |||||||||||||| |||||||||||||    
T  466 caacaatcagagcatgggtggttcaatactaatagacgaatctcctgttatacatgacaataagaataatatcattggctttgtattttgtgcagtattt 367  T
Q  118 tccgtggcgcctccagat 135  Q
    | | |||| |||| ||||    
T  366 tgcatggcacctcaagat 349  T

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Target: scaffold0428 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 6212 - 6095
Alignment:
Q  18 caacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaatatcaatgataccattggctttgtatgttgtgcagtattt 117  Q
    ||||||||| |||||||||| |||||||| ||||||    ||||||  ||| ||||||||||  ||| ||| |||||||||||||| |||||||||||||    
T  6212 caacaatcagagcatgggtggttcaatactaatagacgaatctcctgttatacatgacaataagaataatatcattggctttgtattttgtgcagtattt 6113  T
Q  118 tccgtggcgcctccagat 135  Q
    | | |||| |||| ||||    
T  6112 tgcatggcacctcaagat 6095  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 130
Target Start/End: Original strand, 17441111 - 17441160
Alignment:
Q  81 caatgataccattggctttgtatgttgtgcagtattttccgtggcgcctc 130  Q
    |||| ||| |||||| |||||||||||||||||||||||| |||| ||||    
T  17441111 caataatatcattggttttgtatgttgtgcagtattttccatggcacctc 17441160  T

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