View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12597_low_38 (Length: 250)
Name: NF12597_low_38
Description: NF12597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12597_low_38 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 13302919 - 13303157
Alignment:
| Q |
12 |
agagatcgatcaatcaacatatctagaatgacttcttttacctttaacattcaacattgtgttaagtatggtatcaaagacacttttctcaatgtacata |
111 |
Q |
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| T |
13302919 |
agagatagattaatcaacatatctagaatgacttcttttacctttaacattcatcatcgtgttaaatatggtatcaaagacacttttctcaatgtgcata |
13303018 |
T |
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| Q |
112 |
acatcgagattgtgcctcaagaggttatctttctaataagccaaatcccaaaaaataatatttttatccaattgtgtgaccatccataaccttatggttt |
211 |
Q |
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| T |
13303019 |
acatcgagattgtacctcaagaggttatctttctaataagccaaatcccaaaaaatattttttttatccaattgtgtgaccatccataaccttatggttt |
13303118 |
T |
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| Q |
212 |
caaaacaacatgagatacaacttgtacctttgagaaatc |
250 |
Q |
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| T |
13303119 |
caaaacaacacgagatacaacttgtacctttgagaaatc |
13303157 |
T |
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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 13300371 - 13300408
Alignment:
| Q |
23 |
aatcaacatatctagaatgacttcttttacctttaaca |
60 |
Q |
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| T |
13300371 |
aatcaacatatctagaatgacttcttttacctttaaca |
13300408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 168
Target Start/End: Original strand, 1935151 - 1935222
Alignment:
| Q |
97 |
ttctcaatgtacataacatcgagattgtgcctcaagaggttatctttctaataagccaaatcccaaaaaata |
168 |
Q |
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| T |
1935151 |
ttctcaatatgcatgacatcgagattgtgccttaatagattatctttccaatatagcaaatcccaaaaaata |
1935222 |
T |
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