View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12597_low_39 (Length: 247)
Name: NF12597_low_39
Description: NF12597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12597_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 12 - 229
Target Start/End: Original strand, 20367974 - 20368196
Alignment:
| Q |
12 |
agagaagggagaggagttaaatcttcgtttgtattacatgtaatttagatttccacacacgaaacaaatgtttatgagtaaaaatttagttaaaa-tagt |
110 |
Q |
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| T |
20367974 |
agagaagggagaggagttaaatcttcgtttgtattacatgtaatttagatttccacacacgaaacaaatgtttatgagtaaaaatttagttaaaattagt |
20368073 |
T |
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| Q |
111 |
ttatattaatatcatcaaaataaacatgagaacaataataaaac----aataactaccgtgtttctataaaaataagtcacttatgaagtcattgaagcg |
206 |
Q |
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| T |
20368074 |
ttatattaatatcatcaaaataaacatgagaacaataataaaacaattaataactaccgtgtttctataaaaataagtcacttatgaagtcattgaagcg |
20368173 |
T |
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| Q |
207 |
tcaattacttcatatgccgaaca |
229 |
Q |
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| T |
20368174 |
tcaattacttcatatgccgaaca |
20368196 |
T |
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