View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12597_low_50 (Length: 208)
Name: NF12597_low_50
Description: NF12597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12597_low_50 |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 11909847 - 11910025
Alignment:
| Q |
18 |
aagaggtcgtattattgggattaagcttcgttaaccaatcgtctaatgttttttcttaagttaagaaacatgaaataaagagagaggtgaacaaagataa |
117 |
Q |
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| T |
11909847 |
aagagatcatattgttgggattaagcttcgttaaccaatcatctaatgttttttcttaagttaagaaacatgaaataaagagagaggtgaacagagataa |
11909946 |
T |
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| Q |
118 |
gatcatcaatttcaactattggagagatttggagcttgagttcaagcttatggatgcttctggaacaacattcatctct |
196 |
Q |
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| T |
11909947 |
gatcatcaatttcaactattggagagatttggagcttgagttcaagcttatggatgcttctcgaacaacattcatctct |
11910025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 11918103 - 11917925
Alignment:
| Q |
18 |
aagaggtcgtattattgggattaagcttcgttaaccaatcgtctaatgttttttcttaagttaagaaacatgaaataaagagagaggtgaacaaagataa |
117 |
Q |
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||||| || |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
11918103 |
aagagatcatattgttgggattaagcttcgttaaccaatcatctaatgttttttcttaagttaagaaacatgaaataaagagagaggtgaacagagataa |
11918004 |
T |
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| Q |
118 |
gatcatcaatttcaactattggagagatttggagcttgagttcaagcttatggatgcttctggaacaacattcatctct |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11918003 |
gatcatcaatttcaactattggagagatttggagcttgagttcaagcttatggatgcttctcgaacaacattcatctct |
11917925 |
T |
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