View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12597_low_7 (Length: 546)
Name: NF12597_low_7
Description: NF12597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12597_low_7 |
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| [»] scaffold0632 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 209 - 541
Target Start/End: Complemental strand, 41788149 - 41787816
Alignment:
| Q |
209 |
aacatgttcttcacatagaatagttctccaccctgaattccacatcatccatctccaatagtaaagaaaacaagaacttatttttgagtatcaagaacac |
308 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
41788149 |
aacatgttcttcacatagaacagttctccaccctgaattccacatcatccatctccaatggtaaagaaaacaagaacttatttttgagtatcaagaacac |
41788050 |
T |
|
| Q |
309 |
tttctagaactagcattggagttgctcttagtccaagtaaaaacggcagagctgagagagacgaatgaatgaaaaactgagacatatgtcgaatagggtc |
408 |
Q |
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||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41788049 |
tttttagaactaggattggagttgctcttagtccaagtaaaaacggcagagctgagagagacgaatgaatgaaaaactgagacatatgtcgaatagggtc |
41787950 |
T |
|
| Q |
409 |
cagagttggactacgtggttttacctgatagatatagtctgttataac-nnnnnnnnnaggtgtgacttctttctattgtgatttccatggtggttcatg |
507 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||| |
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| T |
41787949 |
cagaggtggactacgtggttttacctgatagatatagtctgttataacttttttttttaggtgtgacttctttctattgttagttccatggtggttcatg |
41787850 |
T |
|
| Q |
508 |
aaatttaacacgtggttcgtcagtgaacgagcag |
541 |
Q |
| |
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|||||||||||||||||||| |||| | |||||| |
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| T |
41787849 |
aaatttaacacgtggttcgttagtggaggagcag |
41787816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 213 - 339
Target Start/End: Complemental strand, 10866180 - 10866054
Alignment:
| Q |
213 |
tgttcttcacatagaatagttctccaccctgaattccacatcatccatctccaatagtaaagaaaacaagaacttatttttgagtatcaagaacactttc |
312 |
Q |
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|||||| |||| | || ||||||||| ||| |||||||||||||||||| |||| |||||||||||||||| || ||||||||||||||||||||| || |
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| T |
10866180 |
tgttctccacagaaaacagttctccaacctcgattccacatcatccatctgcaatggtaaagaaaacaagaatttgtttttgagtatcaagaacactctc |
10866081 |
T |
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| Q |
313 |
tagaactagcattggagttgctcttag |
339 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
10866080 |
tagaactagcattggagttgctcttag |
10866054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 41788365 - 41788279
Alignment:
| Q |
1 |
ctccttctttccttttttcttataattctctcatcttaattttgtaattgattttcagattcggaatttt-aagtgtttgatttggatt |
88 |
Q |
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|||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
41788365 |
ctccttctttccttttttcttataattctctcatctcaaatttgta--tgattttcagattcggaattttcaagtgtttgatttggatt |
41788279 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 41 - 121
Target Start/End: Complemental strand, 10866388 - 10866308
Alignment:
| Q |
41 |
tttgtaattgattttcagattcggaattttaagtgtttgatttggattcttaaatttggattttaaatgtttgtagttgtg |
121 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||| ||||| ||||| |
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| T |
10866388 |
tttgtaattgattttcagatttggaattttaagtgtttgatttggattcttaaatttagatttggaatgattgtaattgtg |
10866308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 8e-47; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 209 - 339
Target Start/End: Complemental strand, 1331779 - 1331648
Alignment:
| Q |
209 |
aacatgttcttcacatagaatagttctccaccctgaattccacatcatccatctccaatagtaaagaaaacaagaacttatttttgag-tatcaagaaca |
307 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||| |
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| T |
1331779 |
aacatgttcttcacatagagcagttctccaccctgaattccacatcatccatctccaatggtaaagaaaacaagaacttgcttttgagttatcaagaaca |
1331680 |
T |
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| Q |
308 |
ctttctagaactagcattggagttgctcttag |
339 |
Q |
| |
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| ||||||||||||||||||||||||||||| |
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| T |
1331679 |
ccgtctagaactagcattggagttgctcttag |
1331648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 1332030 - 1331916
Alignment:
| Q |
1 |
ctccttctttccttttttcttataattctctcatcttaattttgtaattgattttcagattcggaattttaagtgtttgatttggattcttaaatttgga |
100 |
Q |
| |
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||||||||||| ||||||||||||||||| |||||| || ||||| |||||||||| |||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
1332030 |
ctccttctttctttttttcttataattctttcatctcaaatttgtgattgattttcggatttggaattttaagtgtttgatttggatttttaaatttgga |
1331931 |
T |
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| Q |
101 |
ttttaaatgtttgta |
115 |
Q |
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|||| |||||||||| |
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| T |
1331930 |
ttttgaatgtttgta |
1331916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0632 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: scaffold0632
Description:
Target: scaffold0632; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 204 - 338
Target Start/End: Original strand, 1758 - 1893
Alignment:
| Q |
204 |
gttgtaacatgttcttcacatagaatagttctccaccctgaattccacatcatccatctccaatagtaaagaaa-acaagaacttatttttgagtatcaa |
302 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||| |
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| T |
1758 |
gttggaacatgttcttcacatagaacagttctccatcctggattccacatcatccatctccaatggtaaagaaacacaagaacttgtttttgagtatcaa |
1857 |
T |
|
| Q |
303 |
gaacactttctagaactagcattggagttgctctta |
338 |
Q |
| |
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|||||| |||||||||||||||| ||||||||||| |
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| T |
1858 |
gaacacagtctagaactagcattgaagttgctctta |
1893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0632; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 1611 - 1653
Alignment:
| Q |
79 |
gatttggattcttaaatttggattttaaatgtttgtagttgtg |
121 |
Q |
| |
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||||||||||||||||||| |||||| |||||||||| ||||| |
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| T |
1611 |
gatttggattcttaaatttagattttgaatgtttgtaattgtg |
1653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 3e-31; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 213 - 338
Target Start/End: Complemental strand, 21490754 - 21490629
Alignment:
| Q |
213 |
tgttcttcacatagaatagttctccaccctgaattccacatcatccatctccaatagtaaagaaaacaagaacttatttttgagtatcaagaacactttc |
312 |
Q |
| |
|
|||||| ||||||||| |||||||| | || ||||||||||||||||||||||| ||||||||| |||||||||| |||||||| |||||||||| | |
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|
| T |
21490754 |
tgttctccacatagaacggttctccaacatggattccacatcatccatctccaatggtaaagaaagcaagaacttagttttgagtttcaagaacaccgtg |
21490655 |
T |
|
| Q |
313 |
tagaactagcattggagttgctctta |
338 |
Q |
| |
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| |||||||||||||||||||||||| |
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| T |
21490654 |
tggaactagcattggagttgctctta |
21490629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 209 - 336
Target Start/End: Complemental strand, 34871039 - 34870911
Alignment:
| Q |
209 |
aacatgttcttcacatagaatagttctccaccctgaattccacatcatccatctccaatagtaaagaaaacaagaactt-atttttgagtatcaagaaca |
307 |
Q |
| |
|
|||||||||| |||| |||| ||||||||| |||| | |||||||||| |||||||||||| ||||||| ||||||||| ||||||||| ||||||||| |
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| T |
34871039 |
aacatgttctccacagagaacagttctccaacctggagtccacatcattcatctccaatagcaaagaaagcaagaacttgttttttgagtttcaagaaca |
34870940 |
T |
|
| Q |
308 |
ctttctagaactagcattggagttgctct |
336 |
Q |
| |
|
| | |||||||| | ||| ||||||||| |
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|
| T |
34870939 |
atgtgtagaactaccgttgtagttgctct |
34870911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 21490895 - 21490851
Alignment:
| Q |
41 |
tttgtaattgattttcagattcggaattttaagtgtttgatttgg |
85 |
Q |
| |
|
|||||||||||||||| |||| ||||||| ||||||||||||||| |
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|
| T |
21490895 |
tttgtaattgattttcggatttggaatttgaagtgtttgatttgg |
21490851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 34871186 - 34871142
Alignment:
| Q |
41 |
tttgtaattgattttcagattcggaattttaagtgtttgatttgg |
85 |
Q |
| |
|
|||||||||||||||| ||| ||||||| ||||||||||||||| |
|
|
| T |
34871186 |
tttgtaattgattttcgaatttggaatttaaagtgtttgatttgg |
34871142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 299 - 339
Target Start/End: Complemental strand, 48255476 - 48255436
Alignment:
| Q |
299 |
tcaagaacactttctagaactagcattggagttgctcttag |
339 |
Q |
| |
|
||||||||| | | ||||||||||||||||||||||||||| |
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|
| T |
48255476 |
tcaagaacaatgtgtagaactagcattggagttgctcttag |
48255436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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