View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12597_low_8 (Length: 469)
Name: NF12597_low_8
Description: NF12597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12597_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 6 - 453
Target Start/End: Complemental strand, 26621637 - 26621190
Alignment:
| Q |
6 |
agcagcacagagatgccttgtaatacaagctacttgtgctagttagcatcttggctcaaccataggcttgttatgggcattagcatagagtagcataact |
105 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
26621637 |
agcagcatagagatgccttgtaatacaagctacttgtgctagttagcatcttggctcaaccataggcttgttatgagcattagcatagagtagcataact |
26621538 |
T |
|
| Q |
106 |
ttatattttctattgtgttcactcggcattcagcaaggttatcagaagttagtttcatagattagttagagtttgttagactcgagctataaatatctcc |
205 |
Q |
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|||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26621537 |
ttatcttttctattgtgttgactcgacattcagcaaggttatcagaagttagtttcatagattagttagagtttgttagactcgagctataaatatctcc |
26621438 |
T |
|
| Q |
206 |
ttgatcttcagtgtgagttactgcctcaatcaaggatctagatttgtttttaaattttttactgctctcgataaactttcagaagaacttgaatcttacc |
305 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26621437 |
ttgatcttcagtgtgagttactacctcaatcaaggatctagatttgtttttaaattttttactgctctcgataaactttcagaagaacttgaatcttacc |
26621338 |
T |
|
| Q |
306 |
ttcttacacttgtttgtggatgtccaatgtgtagtgtttgtgctgctctgagaccgcatcaattaggtgaacgattgctgcttccctagtctgaatcatc |
405 |
Q |
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|||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||| ||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
26621337 |
ttcttacactagtttgtggatgtccaatgtgtagcgtttgtgctgctctgcgaccgcgtcaatgaggtgaatgattgctgcttccctagtctgaatcatc |
26621238 |
T |
|
| Q |
406 |
tggaggtttgttgcctcctcctcgacgcgacttcatcggaatcgaaac |
453 |
Q |
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||||||||||| |||||||||||||||| |||||||| |||||||||| |
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| T |
26621237 |
tggaggtttgtcgcctcctcctcgacgcaacttcatcagaatcgaaac |
26621190 |
T |
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