View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12598_high_1 (Length: 880)

Name: NF12598_high_1
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12598_high_1
NF12598_high_1
[»] chr6 (29 HSPs)
chr6 (342-859)||(33596525-33597042)
chr6 (11-344)||(33594069-33594399)
chr6 (581-863)||(11087405-11087687)
chr6 (564-842)||(16130859-16131132)
chr6 (564-797)||(19305350-19305583)
chr6 (564-856)||(20148203-20148493)
chr6 (564-856)||(22184335-22184625)
chr6 (659-847)||(34064176-34064364)
chr6 (658-843)||(30680972-30681157)
chr6 (661-848)||(12424235-12424422)
chr6 (661-864)||(22572028-22572230)
chr6 (574-752)||(14080380-14080557)
chr6 (659-796)||(18147287-18147424)
chr6 (660-797)||(31295507-31295644)
chr6 (660-848)||(12449504-12449692)
chr6 (666-776)||(3404855-3404965)
chr6 (660-842)||(27860875-27861057)
chr6 (656-777)||(34187277-34187397)
chr6 (650-841)||(689786-689976)
chr6 (723-842)||(19277004-19277122)
chr6 (699-837)||(9403193-9403331)
chr6 (702-796)||(15480314-15480408)
chr6 (772-821)||(16343673-16343722)
chr6 (656-800)||(9277270-9277413)
chr6 (658-748)||(19331701-19331791)
chr6 (698-796)||(19730564-19730662)
chr6 (712-797)||(31423809-31423894)
chr6 (718-797)||(17380137-17380216)
chr6 (772-831)||(18994073-18994132)
[»] chr4 (12 HSPs)
chr4 (575-830)||(12683683-12683937)
chr4 (651-863)||(2674480-2674688)
chr4 (575-859)||(29156999-29157283)
chr4 (607-841)||(15742081-15742315)
chr4 (664-842)||(14601942-14602120)
chr4 (658-842)||(15514488-15514672)
chr4 (660-844)||(47253259-47253442)
chr4 (699-842)||(19643723-19643866)
chr4 (698-825)||(19809721-19809847)
chr4 (662-827)||(5518524-5518689)
chr4 (760-842)||(1638245-1638327)
chr4 (576-617)||(3981869-3981910)
[»] chr5 (14 HSPs)
chr5 (575-863)||(32418392-32418680)
chr5 (561-859)||(26994516-26994814)
chr5 (661-842)||(22865744-22865925)
chr5 (658-794)||(22903073-22903209)
chr5 (638-861)||(27083146-27083368)
chr5 (698-821)||(24647308-24647431)
chr5 (699-794)||(25333756-25333851)
chr5 (607-842)||(25537334-25537569)
chr5 (658-822)||(20025263-20025426)
chr5 (659-733)||(16621189-16621263)
chr5 (657-723)||(26348125-26348191)
chr5 (760-842)||(18799861-18799943)
chr5 (660-690)||(24546329-24546359)
chr5 (760-842)||(31202302-31202384)
[»] chr8 (19 HSPs)
chr8 (670-841)||(21416730-21416901)
chr8 (575-796)||(24507355-24507575)
chr8 (666-842)||(13754746-13754921)
chr8 (661-842)||(24576510-24576691)
chr8 (658-859)||(18322923-18323124)
chr8 (662-842)||(26916825-26917005)
chr8 (666-797)||(30477629-30477760)
chr8 (677-863)||(5859814-5860000)
chr8 (667-797)||(3459456-3459586)
chr8 (657-839)||(4565323-4565505)
chr8 (723-859)||(17698195-17698331)
chr8 (702-775)||(6928084-6928157)
chr8 (629-690)||(20055530-20055591)
chr8 (772-831)||(16214721-16214780)
chr8 (656-743)||(23269224-23269311)
chr8 (561-607)||(6928216-6928262)
chr8 (660-794)||(15058017-15058151)
chr8 (656-733)||(1909744-1909821)
chr8 (712-749)||(24070886-24070923)
[»] chr1 (18 HSPs)
chr1 (585-797)||(26977647-26977859)
chr1 (575-841)||(22414672-22414938)
chr1 (658-842)||(12177366-12177550)
chr1 (563-842)||(14254969-14255236)
chr1 (563-842)||(4601414-4601693)
chr1 (658-863)||(16050374-16050579)
chr1 (664-842)||(23728747-23728925)
chr1 (657-848)||(25408075-25408266)
chr1 (575-794)||(23280237-23280454)
chr1 (659-766)||(16030376-16030483)
chr1 (662-793)||(52565564-52565695)
chr1 (656-796)||(34273065-34273205)
chr1 (669-752)||(5671761-5671844)
chr1 (586-752)||(16299591-16299756)
chr1 (659-752)||(1659806-1659899)
chr1 (668-752)||(33101524-33101608)
chr1 (662-732)||(16522759-16522829)
chr1 (772-841)||(3590921-3590990)
[»] scaffold0291 (2 HSPs)
scaffold0291 (576-863)||(8487-8769)
scaffold0291 (699-842)||(15357-15500)
[»] chr7 (18 HSPs)
chr7 (575-752)||(39879284-39879461)
chr7 (660-842)||(13292050-13292232)
chr7 (607-842)||(16987019-16987254)
chr7 (659-842)||(9135288-9135471)
chr7 (656-792)||(7486523-7486659)
chr7 (658-752)||(21161222-21161315)
chr7 (651-797)||(26762883-26763029)
chr7 (659-848)||(5925396-5925585)
chr7 (738-842)||(12265052-12265156)
chr7 (565-863)||(5863074-5863372)
chr7 (740-842)||(43171963-43172065)
chr7 (659-830)||(12644766-12644938)
chr7 (723-797)||(29373491-29373565)
chr7 (658-771)||(9867937-9868050)
chr7 (659-752)||(10287613-10287706)
chr7 (660-797)||(34854225-34854362)
chr7 (727-796)||(16204340-16204409)
chr7 (760-841)||(20034397-20034478)
[»] chr2 (22 HSPs)
chr2 (609-859)||(3586294-3586544)
chr2 (656-813)||(12168950-12169108)
chr2 (661-795)||(36267481-36267615)
chr2 (658-796)||(45258125-45258263)
chr2 (660-837)||(15825136-15825313)
chr2 (578-797)||(24499695-24499908)
chr2 (660-797)||(19919038-19919175)
chr2 (658-842)||(29710998-29711180)
chr2 (660-844)||(45714977-45715160)
chr2 (726-841)||(18772296-18772411)
chr2 (658-807)||(12127625-12127774)
chr2 (659-796)||(20120328-20120465)
chr2 (658-844)||(10923090-10923276)
chr2 (564-732)||(30638449-30638617)
chr2 (564-830)||(15390524-15390790)
chr2 (662-752)||(18770296-18770388)
chr2 (658-842)||(19050362-19050546)
chr2 (760-842)||(24157233-24157315)
chr2 (559-617)||(45714897-45714955)
chr2 (760-848)||(19290549-19290637)
chr2 (575-617)||(12168891-12168933)
chr2 (666-776)||(27846512-27846622)
[»] scaffold0140 (1 HSPs)
scaffold0140 (583-822)||(6203-6442)
[»] scaffold0023 (1 HSPs)
scaffold0023 (658-859)||(95720-95921)
[»] scaffold0054 (1 HSPs)
scaffold0054 (698-860)||(68711-68871)
[»] chr3 (20 HSPs)
chr3 (575-801)||(9801052-9801277)
chr3 (658-842)||(431243-431427)
chr3 (698-825)||(28723718-28723845)
chr3 (659-796)||(21342260-21342397)
chr3 (723-858)||(16704447-16704582)
chr3 (583-842)||(1770730-1770990)
chr3 (698-859)||(30606948-30607109)
chr3 (760-842)||(12108501-12108583)
chr3 (760-842)||(25496020-25496102)
chr3 (665-843)||(20622393-20622573)
chr3 (660-803)||(14860065-14860208)
chr3 (660-842)||(12516167-12516349)
chr3 (561-779)||(17485614-17485832)
chr3 (737-844)||(13933003-13933113)
chr3 (699-766)||(17143752-17143819)
chr3 (614-840)||(12731490-12731716)
chr3 (698-752)||(13085090-13085144)
chr3 (714-839)||(7835504-7835629)
chr3 (575-624)||(17143894-17143943)
chr3 (760-841)||(20122707-20122788)
[»] scaffold0002 (2 HSPs)
scaffold0002 (586-797)||(379624-379835)
scaffold0002 (712-805)||(120975-121068)
[»] scaffold0005 (1 HSPs)
scaffold0005 (664-842)||(215258-215436)
[»] scaffold0205 (2 HSPs)
scaffold0205 (642-818)||(10866-11042)
scaffold0205 (661-796)||(22869-23004)
[»] scaffold0360 (1 HSPs)
scaffold0360 (701-796)||(13945-14040)
[»] scaffold0013 (1 HSPs)
scaffold0013 (660-799)||(4394-4533)
[»] scaffold0294 (1 HSPs)
scaffold0294 (699-842)||(169-313)
[»] scaffold0505 (1 HSPs)
scaffold0505 (659-752)||(7866-7959)
[»] scaffold0543 (1 HSPs)
scaffold0543 (768-848)||(4869-4949)
[»] scaffold0492 (1 HSPs)
scaffold0492 (768-848)||(6415-6495)
[»] scaffold0174 (1 HSPs)
scaffold0174 (575-752)||(29295-29470)
[»] scaffold0103 (1 HSPs)
scaffold0103 (664-841)||(40782-40959)
[»] scaffold0380 (1 HSPs)
scaffold0380 (699-842)||(6787-6930)
[»] scaffold0464 (1 HSPs)
scaffold0464 (616-752)||(11454-11587)
[»] scaffold0074 (1 HSPs)
scaffold0074 (583-752)||(35158-35327)
[»] scaffold0057 (1 HSPs)
scaffold0057 (656-785)||(73786-73915)


Alignment Details
Target: chr6 (Bit Score: 418; Significance: 0; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 342 - 859
Target Start/End: Original strand, 33596525 - 33597042
Alignment:
Q  342 tgtggactaccttatgccaacaccaatttatctgtaattccatcggttgtgggatattattgaatctttgctatattactctacatgtggatgaaagtga 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33596525 tgtggactaccttatgccaacaccaatttatctgtaattccatcggttgtgggatattattgaatttttgctatattactctacatgtggatgaaagtga 33596624  T
Q  442 tgatgtccttccatgagattagtggtaagaatatcatatgaagtacatattgaacttcaagtttactcctatatgcaatgactgagtttgcctaaaatgt 541  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||    
T  33596625 tgatgtccttccatgagattagtagtaagaatatcatatgaagtacatattgaacttcaagttttctctgatatgcaatgactgagtttgcctaaaatgt 33596724  T
Q  542 tagggggtgcaagtatagattttgatttgtctagtgaggatggatgagtggcaaccgtggcggaaaatgctccggtgtgacggtgaaggcttctgataca 641  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  33596725 tagggggtgcaagtatagattttgatttgtccagtgaggatggatgagtggcaaccgtggcggaaaatgctccagtgtgacggtgaaggcttctgatacg 33596824  T
Q  642 gcggcgaagaatccttgcggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaag 741  Q
    |||||||||||||||||||||||||||||||||  |||||||||| ||||| || |||||||||||||| |||||||||||||||| ||||| |||||||    
T  33596825 gcggcgaagaatccttgcggtggaacgaaaggtacctgcaggcacattaacactctaacgctcaactcagtaatgaaactaagaaaaagtgtgtagaaag 33596924  T
Q  742 tgttgtgaaaatggaatcgtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgatta 841  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||| | ||||||    
T  33596925 tgttgtgaaaatggaatcataccttgaggatgaagcaagttcactcttatataggcgcgctttgagcataattgtcaccggattatgcggcgtatgatta 33597024  T
Q  842 gaggcggttataggacac 859  Q
    | |||||||| |||||||    
T  33597025 ggggcggttagaggacac 33597042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 344
Target Start/End: Original strand, 33594069 - 33594399
Alignment:
Q  11 cagagacgacaaacttgttatcccttttctatggtgttttccacatacaaaattatagtgtatatatgatatgacatgatatta--tttttgttactgtt 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||    
T  33594069 cagagacgacaaacttgttatcccttttctatggtgttttccacatacaaaattatagtgtatatatgatatgacatgatatttattttttgttactgtt 33594168  T
Q  109 atctannnnnnnagcaagttactgttatcttatttgtatgtacatgtggaggaaaataatttgcttcatttaagatttgtatatgatctaagacatgtac 208  Q
    |||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||| |||||    
T  33594169 atctatttttttagcaagttactgttatcttatttgtatgtacatgtggaggaaaataatttgcttcatttaagatttgtat--gatctgagacttgtac 33594266  T
Q  209 tatttttatttgattgatgatgatagaaggggtgtagatttaaggcatgggaatgtgaatgattggatatgaaattaatggaaattttgaaacagctctg 308  Q
    |||||||||||||||||||||   || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  33594267 tatttttatttgattgatgat---agtaggggtgtcgatttaaggcatgggaatgtgaatgattggatatgaaattaatggaaattgtgaaacagctctg 33594363  T
Q  309 gtgacttgatgggtcttaatttcttcatcctcatgt 344  Q
    ||||||||||||||||||||||||||||| ||||||    
T  33594364 gtgacttgatgggtcttaatttcttcatcatcatgt 33594399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 581 - 863
Target Start/End: Original strand, 11087405 - 11087687
Alignment:
Q  581 atggatgagtggcaaccgtggcggaaaatgctccggtgtgacggtgaaggcttctgatacagcggcgaagaatccttgcggtggaacgaaaggtgtctgc 680  Q
    |||||||||||||||| |||  ||| ||||||| ||||||| ||| |||||||||  | | || |||  || || | ||||||||||||||| |||||||    
T  11087405 atggatgagtggcaacggtgaaggataatgctctggtgtgatggtaaaggcttcttgtgcggcagcgctgagtcttcgcggtggaacgaaagctgtctgc 11087504  T
Q  681 aggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtaccttaaggatgaagcaag 780  Q
    || ||| ||| | |||| || || || ||| ||||| |||| ||||||||| | ||||  ||||||||||||  ||||| |||||| |||||||| ||||    
T  11087505 agacacattagcactttgacccttaagtcagtaatgtaactgagaaagagtatgtagattgtgttgtgaaaagtgaatcataccttgaggatgaaacaag 11087604  T
Q  781 ttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattagaggcggttataggacacgtgt 863  Q
    ||||| ||||||||||  ||| |||||||||||||||||||||||||||||| ||| ||||  | |||||| |||||||||||    
T  11087605 ttcacccttatataggtgcgcgttgagcataactgtctccggattatgcggcgtgtaattaaggacggttagaggacacgtgt 11087687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 564 - 842
Target Start/End: Original strand, 16130859 - 16131132
Alignment:
Q  564 tgatttgtctagtgaggatggatgagtggcaaccgtggcggaaaatgctccggtgtgacggtgaaggcttctgatacagcggcgaagaatccttgcggtg 663  Q
    |||||||||  ||||||||| ||||||| |||   || ||||||||| |||||||||| | | || |||||||||| |||||||  ||||||||||||||    
T  16130859 tgatttgtccggtgaggatgaatgagtgtcaatgatgacggaaaatgttccggtgtgatgttcaaagcttctgatatagcggcgctgaatccttgcggtg 16130958  T
Q  664 gaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtac 763  Q
    | |||| |||||  || ||||||||     || | ||| |||| ||| ||||| |||| | |||||||||| ||||||||||||||||   ||||| |||    
T  16130959 ggacgacaggtgcttgtaggcacgt-----ctctgacggtcaagtcagtaatggaactgataaagagtgtacagaaagtgttgtgaaacgtgaatcatac 16131053  T
Q  764 cttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattag 842  Q
    ||| ||| |||| |||||| || ||||||||||| ||| || ||||||||||||||||||||||| |||||||||||||    
T  16131054 cttgagggtgaaacaagtttacccttatataggcgcgcattaagcataactgtctccggattatgtggcatgtgattag 16131132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 564 - 797
Target Start/End: Original strand, 19305350 - 19305583
Alignment:
Q  564 tgatttgtctagtgaggatggatgagtggcaaccgtggcggaaaat-gctccggtgtgacggtgaaggcttctgatacagcggcgaagaatccttgcggt 662  Q
    |||| |||||||||||||||||||||| ||||  |||||| ||||| |||||||||||||| ||| || ||||| ||||| ||  | ||||| |||||||    
T  19305350 tgatatgtctagtgaggatggatgagtagcaatggtggcgtaaaattgctccggtgtgacg-tgatggtttctggtacagtggtaatgaatctttgcggt 19305448  T
Q  663 ggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgta 762  Q
    ||||||||||||  ||  |||||||||| | ||| ||||||||| ||| ||||| |||| || |||||||| ||||||||||||||||||  ||||| ||    
T  19305449 ggaacgaaaggttcctagaggcacgttagcacttaaacgctcaagtcagtaatggaactgagtaagagtgtgtagaaagtgttgtgaaaagtgaatcata 19305548  T
Q  763 ccttaaggatgaagcaagttcactcttatataggc 797  Q
    |||| ||| ||||||||| |||| |||| ||||||    
T  19305549 ccttgagggtgaagcaaggtcacccttaaataggc 19305583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 564 - 856
Target Start/End: Original strand, 20148203 - 20148493
Alignment:
Q  564 tgatttgtctagtgaggatggatgagtggcaaccgtggcggaaaatgctccggtgtgacggtgaaggcttctgatacagcggcgaagaatccttgcggtg 663  Q
    |||| |||| ||||||||||||||||||||||   ||||||||| ||||||||||||||| |||  | ||||| ||  | |  || || || ||||||||    
T  20148203 tgatatgtccagtgaggatggatgagtggcaatgatggcggaaagtgctccggtgtgacgatgacagtttctggtatggggctgacgagtctttgcggtg 20148302  T
Q  664 gaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtac 763  Q
    |||||||| |||  ||||| ||||||| | ||  | ||||||| | | ||||| || | ||||||||||||  ||||||||||||||||  ||||| |||    
T  20148303 gaacgaaaagtgcatgcagacacgttagcactccatcgctcaagttagtaatggaattgagaaagagtgta--gaaagtgttgtgaaaagtgaatcatac 20148400  T
Q  764 cttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattagaggcggttatagga 856  Q
    ||| | | ||||||||| |||| ||||||||||||||| ||||| ||||||| |||||| ||  ||||||||| ||||| |  ||||||||||    
T  20148401 cttgatggtgaagcaaggtcacccttatataggcacgcgttgagaataactgcctccgggtttcgcggcatgtcattagggttggttatagga 20148493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 564 - 856
Target Start/End: Complemental strand, 22184625 - 22184335
Alignment:
Q  564 tgatttgtctagtgaggatggatgagtggcaaccgtggcggaaaatgctccggtgtgacggtgaaggcttctgatacagcggcgaagaatccttgcggtg 663  Q
    |||| |||| ||||||||||||||||||||||   ||||||||| ||||||||||||||| |||  | ||||| ||  | |  || || || ||||||||    
T  22184625 tgatatgtccagtgaggatggatgagtggcaatgatggcggaaagtgctccggtgtgacgatgacagtttctggtatggggctgacgagtctttgcggtg 22184526  T
Q  664 gaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtac 763  Q
    |||||||| |||  ||||| ||||||| | ||  | ||||||| | | ||||| || | ||||||||||||  ||||||||||||||||  ||||| |||    
T  22184525 gaacgaaaagtgcatgcagacacgttagcactccatcgctcaagttagtaatggaattgagaaagagtgta--gaaagtgttgtgaaaagtgaatcatac 22184428  T
Q  764 cttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattagaggcggttatagga 856  Q
    ||| | | ||||||||| |||| ||||||||||||||| ||||| ||||||| |||||| ||  ||||||||| ||||| |  ||||||||||    
T  22184427 cttgatggtgaagcaaggtcacccttatataggcacgcgttgagaataactgcctccgggtttcgcggcatgtcattagggttggttatagga 22184335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 659 - 847
Target Start/End: Original strand, 34064176 - 34064364
Alignment:
Q  659 cggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaat 758  Q
    |||| ||||||||||||| ||||||||||||||| || | ||| |||| ||| |||||||||||||||||||||| ||  ||||||||||||||  ||      
T  34064176 cggtagaacgaaaggtgtgtgcaggcacgttaacactatgacgttcaagtcagtaatgaaactaagaaagagtgtgtaagaagtgttgtgaaaagtgatg 34064275  T
Q  759 cgtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattagaggcg 847  Q
     ||||||| ||| |||||||||||||| ||||||||||| ||  |||  |||||| ||| |||| |||||||||| |||||||| ||||    
T  34064276 tgtaccttgagggtgaagcaagttcacccttatataggcgcgagttggccataaccgtcaccgggttatgcggcacgtgattaggggcg 34064364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 658 - 843
Target Start/End: Original strand, 30680972 - 30681157
Alignment:
Q  658 gcggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaa 757  Q
    ||||||| ||||||||||||||||  ||||||| | ||  ||||||||| ||| |||||||||| | |||||| || ||||| || |||||||||  |||    
T  30680972 gcggtgggacgaaaggtgtctgcaatcacgttagcactccaacgctcaagtcagtaatgaaactgataaagagcgtgtagaatgtattgtgaaaagtgaa 30681071  T
Q  758 tcgtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattaga 843  Q
    || |||||| ||||||||||||  ||||  ||| |||||| ||| ||||| ||||| | |||||  || |||||| ||||||||||    
T  30681072 tcataccttgaggatgaagcaatgtcacctttagataggcgcgcgttgagaataaccgcctccgagttttgcggcgtgtgattaga 30681157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 661 - 848
Target Start/End: Complemental strand, 12424422 - 12424235
Alignment:
Q  661 gtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcg 760  Q
    ||||||||||||||| |||||||||||||| | ||   ||  |||| ||| ||||| |||| ||| |||  || || |||||||||||||||  |    |    
T  12424422 gtggaacgaaaggtgcctgcaggcacgttagcactacgacaatcaagtcagtaatggaactgagagagaaagtctaaaaagtgttgtgaaaagtgttgtg 12424323  T
Q  761 taccttaaggatgaagcaagttcactcttatataggcacgct-ttgagcataactgtctccggattatgcggcatgtgattagaggcgg 848  Q
    |||||||||| |||||||||||||| ||||||||||| ||||  ||| |||||| |||||||| |||||||||||||||||||| ||||    
T  12424322 taccttaagggtgaagcaagttcacccttatataggcgcgctcgtga-cataaccgtctccgggttatgcggcatgtgattagaagcgg 12424235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 661 - 864
Target Start/End: Original strand, 22572028 - 22572230
Alignment:
Q  661 gtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcg 760  Q
    ||||||| ||||||| |||||||||||||| | || | |||||||  ||| ||||| || | | ||||||||| ||||| |||||||| |||  |||||     
T  22572028 gtggaacaaaaggtggctgcaggcacgttagcactatgacgctcatgtcagtaatggaattga-aaagagtgtgtagaaggtgttgtgtaaagtgaatca 22572126  T
Q  761 taccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattagaggcggttataggacacg 860  Q
    || ||| ||| ||||||||||||||  |||||| ||| ||| ||||||||||| |||||| | |||||||   | ||||||| | |||||| ||||||||    
T  22572127 tatcttgagggtgaagcaagttcacctttatattggcgcgcgttgagcataaccgtctccaggttatgcgaagtatgattagggacggttagaggacacg 22572226  T
Q  861 tgtg 864  Q
    ||||    
T  22572227 tgtg 22572230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 574 - 752
Target Start/End: Original strand, 14080380 - 14080557
Alignment:
Q  574 agtgaggatggatgagtggcaaccgtggcggaaaatgctccggtgtgacggtgaaggcttctgatacagcggcgaagaatccttgcggtggaacgaaagg 673  Q
    |||||||||||||||||| |||  |||||||||| |||| || ||||| ||||| || ||| | ||| |||| || |||| |||| ||||| ||||||||    
T  14080380 agtgaggatggatgagtgacaatggtggcggaaagtgcttcgatgtgatggtgacggtttccggtacggcggtgacgaattcttgtggtgggacgaaagg 14080479  T
Q  674 tgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaa 752  Q
    || || ||||||| ||| | || | |||||||| | | ||||| |||| ||||||||||| ||| ||||||||||||||    
T  14080480 tgcctacaggcacattagcactctgacgctcaagttagtaatg-aactgagaaagagtgtgtagtaagtgttgtgaaaa 14080557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 659 - 796
Target Start/End: Original strand, 18147287 - 18147424
Alignment:
Q  659 cggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaat 758  Q
    ||||| ||||||||||| ||| ||| |||||||| ||  ||||||||| ||| ||||| |||  ||||||||||| ||||||||||||||||||  || |    
T  18147287 cggtgaaacgaaaggtgcctgtaggaacgttaacactccaacgctcaagtcactaatggaaccgagaaagagtgtgtagaaagtgttgtgaaaagtgact 18147386  T
Q  759 cgtaccttaaggatgaagcaagttcactcttatatagg 796  Q
    | |||||| ||| ||||||||  |||| ||||||||||    
T  18147387 catacctttagggtgaagcaatgtcacccttatatagg 18147424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 660 - 797
Target Start/End: Complemental strand, 31295644 - 31295507
Alignment:
Q  660 ggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatc 759  Q
    ||||||||||||| || ||||||||| |||| | |||  |||||||| ||| |||||||||| ||||||||||| ||  ||||||||||||||  ||       
T  31295644 ggtggaacgaaagttgcctgcaggcatgttagcacttcgacgctcaagtcagtaatgaaactgagaaagagtgtgtatgaagtgttgtgaaaagtgatat 31295545  T
Q  760 gtaccttaaggatgaagcaagttcactcttatataggc 797  Q
    ||||||  ||| |||||||||||||| |||| ||||||    
T  31295544 gtacctcgagggtgaagcaagttcacccttacataggc 31295507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 660 - 848
Target Start/End: Complemental strand, 12449692 - 12449504
Alignment:
Q  660 ggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatc 759  Q
    ||||| |||||||||||||| |||||||||| | || | |||||||| ||| ||||| | || | ||||||||| ||  |||||||||| |||  ||       
T  12449692 ggtgggacgaaaggtgtctgtaggcacgttagcactctgacgctcaagtcagtaatggagctgaaaaagagtgtgtaagaagtgttgtggaaagtgatgt 12449593  T
Q  760 gtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattagaggcgg 848  Q
    ||||||| ||| |||| |||||| || ||||||||||| ||| |||  ||||||||||||| | |||||| |  ||||||||| |||||    
T  12449592 gtaccttgagggtgaatcaagtttacccttatataggcgcgcgttggtcataactgtctccaggttatgcagtgtgtgattaggggcgg 12449504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 666 - 776
Target Start/End: Complemental strand, 3404965 - 3404855
Alignment:
Q  666 acgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtacct 765  Q
    |||||| ||||||| |||||| ||||| || |||| || || ||| ||||| |||| ||||||||||| ||||||||||||||||||  ||||| |||||    
T  3404965 acgaaatgtgtctgtaggcacattaacactctaacacttaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaaatgaatcatacct 3404866  T
Q  766 taaggatgaag 776  Q
    | ||| |||||    
T  3404865 tgagggtgaag 3404855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 660 - 842
Target Start/End: Complemental strand, 27861057 - 27860875
Alignment:
Q  660 ggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatc 759  Q
    |||||||| ||||||||||||||||| ||||   || |||| ||||| ||| ||||| |||| | | |||| || ||  ||||||||||||||  ||       
T  27861057 ggtggaacaaaaggtgtctgcaggcatgttagtactctaacactcaagtcagtaatggaactgaaagagagagtgtaagaagtgttgtgaaaagtgatgt 27860958  T
Q  760 gtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattag 842  Q
    |||| || ||| |||||||||||||| ||| ||||||| ||  |||  |||||| |||||||| ||||||||| |||||||||    
T  27860957 gtactttgagggtgaagcaagttcacccttttataggcgcgtgttggccataaccgtctccgggttatgcggcgtgtgattag 27860875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 656 - 777
Target Start/End: Original strand, 34187277 - 34187397
Alignment:
Q  656 ttgcggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatgg 755  Q
    ||||||||||||||||||||||||||| ||||||| | |   ||| ||||| ||| ||||| |||| ||||||||||| || ||||||| |||||| | |    
T  34187277 ttgcggtggaacgaaaggtgtctgcagacacgttagcacaccaacactcaagtcagtaatggaactgagaaagagtgtgtaaaaagtgtggtgaaagt-g 34187375  T
Q  756 aatcgtaccttaaggatgaagc 777  Q
    ||| ||||||| ||| ||||||    
T  34187376 aattgtaccttgagggtgaagc 34187397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 650 - 841
Target Start/End: Complemental strand, 689976 - 689786
Alignment:
Q  650 gaatccttgcggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtga 749  Q
    ||||| ||||| | ||| ||||||||| |||||| || ||| | ||  || |||||| ||| ||||| |||| |||||| |||| || ||||||||||||    
T  689976 gaatcattgcgatagaatgaaaggtgtttgcaggtacattagcactgcaatgctcaagtcagtaatggaactgagaaagtgtgtgtataaagtgttgtga 689877  T
Q  750 aaatggaatcgtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgatta 841  Q
    |||  |||||||||||| ||| || | |||| |||| ||||||||||| | | |||| |||||  |||||||  || |||||| ||||||||    
T  689876 aaagtgaatcgtaccttgaggctg-atcaaggtcacccttatataggcgcacgttgatcataatcgtctccgagttttgcggcgtgtgatta 689786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 723 - 842
Target Start/End: Complemental strand, 19277122 - 19277004
Alignment:
Q  723 agaaagagtgtatagaaagtgttgtgaaaatggaatcgtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccgg 822  Q
    ||||||||||| ||  ||||||||||||||  ||   ||||||| ||| |||||||||||||| ||||||||||| |||||||  |||||| ||||| ||    
T  19277122 agaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtcataaccgtctctgg 19277023  T
Q  823 attatgcggcatgtgattag 842  Q
     ||||||||| | |||||||    
T  19277022 -ttatgcggcgtatgattag 19277004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 699 - 837
Target Start/End: Original strand, 9403193 - 9403331
Alignment:
Q  699 acgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtaccttaaggatgaagcaagttcactcttatataggca 798  Q
    |||||||| ||||||||| |||| ||||||||||| ||  |||||||||| |||  ||   ||||||| ||| |||||||||||||| ||||||||||      
T  9403193 acgctcaagtcaataatggaactgagaaagagtgtgtaagaagtgttgtggaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggtg 9403292  T
Q  799 cgctttgagcataactgtctccggattatgcggcatgtg 837  Q
    ||| |||  |||||||| |||  | ||||||| ||||||    
T  9403293 cgcgttggccataactgcctctaggttatgcgacatgtg 9403331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 702 - 796
Target Start/End: Complemental strand, 15480408 - 15480314
Alignment:
Q  702 ctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtaccttaaggatgaagcaagttcactcttatatagg 796  Q
    ||||| |||||||||||||| ||||| ||||| ||||||||||||||||||  ||||| |||||| ||  |||||| |  |||| ||||||||||    
T  15480408 ctcaagtcaataatgaaactgagaaaaagtgtgtagaaagtgttgtgaaaagtgaatcataccttgagagtgaagctaagtcacccttatatagg 15480314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 772 - 821
Target Start/End: Original strand, 16343673 - 16343722
Alignment:
Q  772 tgaagcaagttcactcttatataggcacgctttgagcataactgtctccg 821  Q
    |||||||||||||| ||||||||||||||| ||||||||||| |||||||    
T  16343673 tgaagcaagttcacacttatataggcacgcgttgagcataaccgtctccg 16343722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 656 - 800
Target Start/End: Complemental strand, 9277413 - 9277270
Alignment:
Q  656 ttgcggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatgg 755  Q
    |||||||||||||||||||  |||||| ||||||| | || |||||||||| ||| || || |||| ||||||||| | || ||||||| | |||| | |    
T  9277413 ttgcggtggaacgaaaggttcctgcagacacgttagcactataacgctcaagtcagtattggaactgagaaagagtatgtaaaaagtgtggagaaagt-g 9277315  T
Q  756 aatcgtaccttaaggatgaagcaagttcactcttatataggcacg 800  Q
    |||| |||||| ||| |||||| |  |||| |||||| |||||||    
T  9277314 aatcataccttgagggtgaagctaactcacccttatacaggcacg 9277270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 658 - 748
Target Start/End: Complemental strand, 19331791 - 19331701
Alignment:
Q  658 gcggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtg 748  Q
    ||||||||||||||||||  |||||| ||||||   ||   ||||| || ||| ||||| ||||||||||||| |||||||||||||||||    
T  19331791 gcggtggaacgaaaggtgcttgcaggtacgttagtactccgacgcttaagtcagtaatggaactaagaaagagagtatagaaagtgttgtg 19331701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 698 - 796
Target Start/End: Complemental strand, 19730662 - 19730564
Alignment:
Q  698 aacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtaccttaaggatgaagcaagttcactcttatatagg 796  Q
    ||||||||| ||||||||| |||| ||||||||||| ||  |||||| ||| |||  ||   ||||||| ||| |||||||||||||| ||||||||||    
T  19730662 aacgctcaagtcaataatggaactgagaaagagtgtgtaagaagtgtcgtgtaaagtgatgtgtaccttgagggtgaagcaagttcacccttatatagg 19730564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 712 - 797
Target Start/End: Complemental strand, 31423894 - 31423809
Alignment:
Q  712 taatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtaccttaaggatgaagcaagttcactcttatataggc 797  Q
    |||||||||| ||||||||| | ||||||||||||||| ||  ||||| |  ||| ||| |||||||||| ||| |||||||||||    
T  31423894 taatgaaactgagaaagagtatgtagaaagtgttgtgagaagtgaatcatgtcttgagggtgaagcaagtgcacccttatataggc 31423809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 718 - 797
Target Start/End: Original strand, 17380137 - 17380216
Alignment:
Q  718 aactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtaccttaaggatgaagcaagttcactcttatataggc 797  Q
    |||| |||||||||||  | |||||||||||||||  ||||| |||||| ||| ||| ||||| |||| |||||||||||    
T  17380137 aactgagaaagagtgtgaataaagtgttgtgaaaagtgaatcttaccttcaggttgacgcaaggtcacccttatataggc 17380216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 772 - 831
Target Start/End: Original strand, 18994073 - 18994132
Alignment:
Q  772 tgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcgg 831  Q
    |||||||||||||| ||||||||||| |||||   ||||||| |||||| ||||||||||    
T  18994073 tgaagcaagttcacccttatataggcgcgcttgtggcataaccgtctccagattatgcgg 18994132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 2e-51; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 575 - 830
Target Start/End: Original strand, 12683683 - 12683937
Alignment:
Q  575 gtgaggatggatgagtggcaaccgtggcggaaaatgctccggtgtgacggtgaaggcttctgatacagcggcgaagaatccttgcggtggaacgaaaggt 674  Q
    |||||||||||||||||||||  |||||||| |||| ||| |||||||||||| || ||| | |||  || ||| || || |||||||||||||||||||    
T  12683683 gtgaggatggatgagtggcaaaggtggcggataatgttccagtgtgacggtgacggtttccg-tacgacgacgatgagtctttgcggtggaacgaaaggt 12683781  T
Q  675 gtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtaccttaaggatga 774  Q
    | |||||||||||||| | ||  ||||||||| | | |||||||||| ||||||||||| ||||||||||||||||||  ||||| |||||||||| |||    
T  12683782 gcctgcaggcacgttagcactccaacgctcaagttagtaatgaaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaatcataccttaagggtga 12683881  T
Q  775 agcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcg 830  Q
    ||||||||||| ||||| ||||| ||| || |||||||| |||||||  |||||||    
T  12683882 agcaagttcacccttatctaggcgcgcattaagcataaccgtctccgagttatgcg 12683937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 651 - 863
Target Start/End: Complemental strand, 2674688 - 2674480
Alignment:
Q  651 aatccttgcggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaa 750  Q
    ||||||||||||||  |||||||||| ||||| || |||| | ||  ||||| ||| ||||||||| ||||     ||||||| ||||||||||||||||    
T  2674688 aatccttgcggtggggcgaaaggtgtatgcagtcatgttagcactccaacgcacaagtcaataatgtaact----gagagtgtgtagaaagtgttgtgaa 2674593  T
Q  751 aatggaatcgtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattagaggcggtt 850  Q
    ||  ||||| |||||| ||||||||| |||||||| |||||||| || ||| ||||||||||| ||||||||||| |||||| ||||||||| | | |||    
T  2674592 aagtgaatcataccttgaggatgaagtaagttcacccttatataagcgcgcgttgagcataaccgtctccggattttgcggcgtgtgattagggacagtt 2674493  T
Q  851 ataggacacgtgt 863  Q
    | |||||||||||    
T  2674492 agaggacacgtgt 2674480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 575 - 859
Target Start/End: Original strand, 29156999 - 29157283
Alignment:
Q  575 gtgaggatggatgagtggcaaccgtggcggaaaatgctccggtgtgacggtgaaggcttctgatacagcggcgaagaatccttgcggtggaacgaaaggt 674  Q
    ||||||||||||||||| ||||  ||  ||||| |||||||||||||| | || || ||| | ||  ||| ||| |||||||||||||||||||||||||    
T  29156999 gtgaggatggatgagtgacaacgatgatggaaagtgctccggtgtgacagcgatggtttccggtaaggcgacgatgaatccttgcggtggaacgaaaggt 29157098  T
Q  675 gtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtaccttaaggatga 774  Q
    |  ||||| ||||||  | ||  ||||||||| | | ||||| |||| ||||| ||||| ||| |||||||||| |||  ||| | |||||| | | |||    
T  29157099 gcatgcagacacgtttgcactccaacgctcaagttagtaatggaactgagaaaaagtgtgtagtaagtgttgtgtaaagtgaaccataccttgatggtga 29157198  T
Q  775 agcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattagaggcggttataggacac 859  Q
    || |||||||| ||||||||||| ||| | ||| ||||| ||||| || |||||||||   ||||||| | |||||| |||||||    
T  29157199 agtaagttcacccttatataggcgcgcgtagaggataaccgtctctgggttatgcggctaatgattagggacggttagaggacac 29157283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 607 - 841
Target Start/End: Complemental strand, 15742315 - 15742081
Alignment:
Q  607 aatgctccggtgtgacggtgaaggcttctgatacagcggcgaagaatccttgcggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaa 706  Q
    ||||||||||||||||||| | || |||||| || ||| ||| || || | | |||||| ||||||||| |||| ||||||||| | || | ||||||||    
T  15742315 aatgctccggtgtgacggtaacggtttctgacacggcgacgatgagtcttcgtggtggagcgaaaggtgcctgctggcacgttagcactcttacgctcaa 15742216  T
Q  707 ctcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtaccttaaggatgaagcaagttcactcttatataggcacgctttga 806  Q
     ||| ||||| |||| ||||| ||||| ||  ||||||||||||||  ||   ||||||| ||  |||||||| ||||| ||||||||||| ||  |||     
T  15742215 gtcagtaatggaactgagaaaaagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagactgaagcaaattcacccttatataggcgcgtgttgg 15742116  T
Q  807 gcataactgtctccggattatgcggcatgtgatta 841  Q
     |||||| |||||||| ||||||||| ||||||||    
T  15742115 ccataaccgtctccgggttatgcggcgtgtgatta 15742081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 664 - 842
Target Start/End: Complemental strand, 14602120 - 14601942
Alignment:
Q  664 gaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtac 763  Q
    ||||||||| ||||||||||||||||| |  |  ||||||||| ||| |||||||||| | | ||||||| ||  ||||||||||||||  |    ||||    
T  14602120 gaacgaaagttgtctgcaggcacgttagcaatccaacgctcaagtcagtaatgaaactgaaagagagtgtgtaagaagtgttgtgaaaagtgttgtgtac 14602021  T
Q  764 cttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattag 842  Q
    ||| ||| |||||||||||||  ||||||||| |  |  |||| ||||||||||||||| ||||||||| |||||||||    
T  14602020 cttgagggtgaagcaagttcatccttatatagccgtgtgttgatcataactgtctccgggttatgcggcgtgtgattag 14601942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 658 - 842
Target Start/End: Complemental strand, 15514672 - 15514488
Alignment:
Q  658 gcggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaa 757  Q
    ||||||||||||| |||| ||| |||||||||| | ||  ||||||||| ||| ||||| |||| | ||||||||| ||  |||||||||| |||  ||     
T  15514672 gcggtggaacgaagggtgcctgtaggcacgttagcactccaacgctcaagtcagtaatggaactgaaaaagagtgtgtaagaagtgttgtggaaagtgat 15514573  T
Q  758 tcgtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattag 842  Q
      ||||||| ||| |||||||||||||| ||||||||||| |||  ||  ||||||  ||||| | ||||||||||| |||||||    
T  15514572 gtgtaccttgagggtgaagcaagttcacccttatataggctcgccctggtcataaccatctccaggttatgcggcatatgattag 15514488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 660 - 844
Target Start/End: Original strand, 47253259 - 47253442
Alignment:
Q  660 ggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatc 759  Q
    ||||| || |||||||  |||||||| |||| | ||  ||||||||| ||| ||||| |||| ||||||||||| || |||||||||||||||  |||||    
T  47253259 ggtgggacaaaaggtgcttgcaggcatgttagcactccaacgctcaagtcagtaatggaactgagaaagagtgtgtaaaaagtgttgtgaaaagtgaatc 47253358  T
Q  760 gtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattagag 844  Q
     |||||| ||| |||||| |  |||| ||||||||||| |||  |||  |||||||||||||| || |||||  |||||||||||    
T  47253359 ataccttgagggtgaagctaagtcacccttatataggcgcgc-atgataataactgtctccgggttttgcggtgtgtgattagag 47253442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 699 - 842
Target Start/End: Original strand, 19643723 - 19643866
Alignment:
Q  699 acgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtaccttaaggatgaagcaagttcactcttatataggca 798  Q
    ||||| || ||| ||||| |||| ||||||||||| |||||||| |||||||||  ||||| |||||| ||| |||| ||||||||| |||||||||||     
T  19643723 acgcttaagtcagtaatggaactgagaaagagtgtgtagaaagtcttgtgaaaagtgaatcataccttgagggtgaaacaagttcacccttatataggcg 19643822  T
Q  799 cgctttgagcataactgtctccggattatgcggcatgtgattag 842  Q
     || ||||| ||||| ||||| |  ||||||||| || ||||||    
T  19643823 tgcgttgaggataaccgtctctgagttatgcggcgtgagattag 19643866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 698 - 825
Target Start/End: Original strand, 19809721 - 19809847
Alignment:
Q  698 aacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtaccttaaggatgaagcaagttcactcttatataggc 797  Q
    ||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||  ||||  |||||| ||| |||| | |  |||| |||| ||||||    
T  19809721 aacgctcaagtcagtaatgaaactaagaaagagtgtgtagaaagtgttgtgaaaagtgaattataccttgagggtgaaactaagtcacccttacataggc 19809820  T
Q  798 acgctttgagcataactgtctccggatt 825  Q
     |||  |||| |||||||||||||||||    
T  19809821 gcgc-gtgagaataactgtctccggatt 19809847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 662 - 827
Target Start/End: Original strand, 5518524 - 5518689
Alignment:
Q  662 tggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgt 761  Q
    ||||||||||||||  ||||| ||||||| | ||| ||||||||| ||| ||||  |||| ||| ||| ||| ||  |||||||||| |||  ||  |||    
T  5518524 tggaacgaaaggtgagtgcagacacgttagcacttcaacgctcaagtcagtaattgaactgagagagaatgtgtaagaagtgttgtggaaagtgatgcgt 5518623  T
Q  762 accttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattat 827  Q
    ||||| ||| |||||||||||||| ||||||||||| ||  ||| ||||||| |||||||| ||||    
T  5518624 accttgagggtgaagcaagttcacccttatataggcgcgtgttgggcataaccgtctccgggttat 5518689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 760 - 842
Target Start/End: Complemental strand, 1638327 - 1638245
Alignment:
Q  760 gtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattag 842  Q
    ||||||| ||| |||||||||||||| ||||||||||  ||||    ||||||| |||||||| ||||||||||| |||||||    
T  1638327 gtaccttgagggtgaagcaagttcacccttatataggtgcgctcgtggcataaccgtctccgggttatgcggcatatgattag 1638245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 576 - 617
Target Start/End: Original strand, 3981869 - 3981910
Alignment:
Q  576 tgaggatggatgagtggcaaccgtggcggaaaatgctccggt 617  Q
    |||||||||||||| |||||| ||||||||||||| ||||||    
T  3981869 tgaggatggatgagaggcaacggtggcggaaaatgttccggt 3981910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 2e-42; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 575 - 863
Target Start/End: Complemental strand, 32418680 - 32418392
Alignment:
Q  575 gtgaggatggatgagtggcaaccgtggcggaaaatgctccggtgtgacggtgaaggcttctgatacagcggcgaagaatccttgcggtggaacgaaaggt 674  Q
    |||||||||||||| ||||||| ||||||||||||||| |||||||| ||| |||||||    ||| | ||||| ||||||||    ||||||||||||     
T  32418680 gtgaggatggatgaatggcaacggtggcggaaaatgctacggtgtgatggtaaaggctttcagtacggtggcgaggaatccttataatggaacgaaagga 32418581  T
Q  675 gtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtaccttaaggatga 774  Q
    | |||||||||||| ||| || | |||||||| ||| | ||| |||  ||||||||||| |||| ||||||||||| |  ||||| |||||| |||||||    
T  32418580 gcctgcaggcacgtcaacactctgacgctcaagtcactgatggaacagagaaagagtgtgtagagagtgttgtgaagagtgaatcataccttgaggatga 32418481  T
Q  775 agcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattagaggcggttataggacacgtgt 863  Q
    ||||||||||| ||| ||||| |  || || ||| ||||||||||||| ||||||||| ||||||||| |  |||||  ||||||||||    
T  32418480 agcaagttcacccttgtatagacgtgcgttaagcttaactgtctccgggttatgcggcgtgtgattagggatggttaggggacacgtgt 32418392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 561 - 859
Target Start/End: Complemental strand, 26994814 - 26994516
Alignment:
Q  561 ttttgatttgtctagtgaggatggatgagtggcaaccgtggcggaaaatgctccggtgtgacggtgaaggcttctgatacagcggcgaagaatccttgcg 660  Q
    ||||||||||||  ||||||||||||||| || ||| |||| ||||| ||||||| ||||||||||| || ||||| ||| | || || || |||||||     
T  26994814 ttttgatttgtccggtgaggatggatgagaggtaacagtggtggaaagtgctccgatgtgacggtgatggtttctggtacggtggtgacgagtccttgca 26994715  T
Q  661 gtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcg 760  Q
    |||| || |||||||||| ||| ||||||| | ||   |||||||| ||| ||||| || | ||||||||||| ||||| ||||||||||||  |||||     
T  26994714 gtgggacaaaaggtgtcttcagacacgttagcactccgacgctcaagtcagtaatggaattgagaaagagtgtttagaaggtgttgtgaaaagtgaatca 26994615  T
Q  761 taccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattagaggcggttataggacac 859  Q
    ||||||  || ||||||||| |||| ||||||||||| ||| |||||  |||| |||| ||  || |||||| ||||||||| | || ||| |||||||    
T  26994614 taccttgggggtgaagcaaggtcacccttatataggcgcgcgttgagagtaaccgtcttcgagttttgcggcgtgtgattagggacgattagaggacac 26994516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 661 - 842
Target Start/End: Original strand, 22865744 - 22865925
Alignment:
Q  661 gtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcg 760  Q
    |||||||||||||||  |||||| |||||| | |||| |||||||| | | ||||| |||| ||||| ||||| ||  || |||||||||||  ||   |    
T  22865744 gtggaacgaaaggtgcatgcaggtacgttagcactttgacgctcaagttagtaatggaactgagaaaaagtgtgtaagaaatgttgtgaaaagtgatgtg 22865843  T
Q  761 taccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattag 842  Q
    |||||| ||| |||||||||||||| |||||||||||  || |||  |||||| || ||||||||||||| | |||||||||    
T  22865844 taccttgagggtgaagcaagttcacccttatataggcgtgcgttggccataaccgtttccggattatgcgacttgtgattag 22865925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 658 - 794
Target Start/End: Original strand, 22903073 - 22903209
Alignment:
Q  658 gcggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaa 757  Q
    ||||||||||||||||| |  | ||||| |||| | ||| ||||||||| ||| ||||| |||| ||||||||||| ||||||||||||||||||  |||    
T  22903073 gcggtggaacgaaaggttttcgtaggcatgttagcacttcaacgctcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaa 22903172  T
Q  758 tcgtaccttaaggatgaagcaagttcactcttatata 794  Q
    || |||||| ||| |||| |||  |||| ||||||||    
T  22903173 tcataccttgagggtgaaacaatatcacccttatata 22903209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 638 - 861
Target Start/End: Complemental strand, 27083368 - 27083146
Alignment:
Q  638 tacagcggcgaagaatccttgcggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatag 737  Q
    ||||| |||||||| || | ||||| |||||||| |||||||||| ||||||| | ||  ||| ||||| ||| ||| ||||||  |||||||||| |||    
T  27083368 tacagtggcgaagagtcttcgcggtagaacgaaatgtgtctgcagacacgttagcactccaacactcaagtcagtaa-gaaactgtgaaagagtgtgtag 27083270  T
Q  738 aaagtgttgtgaaaatggaatcgtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtg 837  Q
    |||||||||||||||  ||||| |||||| ||| |||||  |  |||| |||  |||||| |||  |||| |||||||||||| | || |||||| ||||    
T  27083269 aaagtgttgtgaaaagtgaatcataccttgagggtgaagttaagtcacccttgcataggcgcgc-gtgagaataactgtctccaggttttgcggcgtgtg 27083171  T
Q  838 attagag-gcggttataggacacgt 861  Q
    ||||||| || |||| |||||||||    
T  27083170 attagagagcagttagaggacacgt 27083146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 698 - 821
Target Start/End: Original strand, 24647308 - 24647431
Alignment:
Q  698 aacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtaccttaaggatgaagcaagttcactcttatataggc 797  Q
    ||||||||| ||| ||||| |||| | ||||||||| ||  ||||||||||||||  ||    |||||||||| |||||||||||||| |||||||||||    
T  24647308 aacgctcaattcagtaatggaactgaaaaagagtgtgtaagaagtgttgtgaaaagtgatgtataccttaagggtgaagcaagttcacccttatataggc 24647407  T
Q  798 acgctttgagcataactgtctccg 821  Q
     ||||| || ||||| ||||||||    
T  24647408 gcgcttggatcataattgtctccg 24647431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 699 - 794
Target Start/End: Original strand, 25333756 - 25333851
Alignment:
Q  699 acgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtaccttaaggatgaagcaagttcactcttatata 794  Q
    |||||||| ||| ||||| |||||||| ||||||| ||||||||||||| ||||  ||||| ||| || ||  |||||||||||||||||||||||    
T  25333756 acgctcaagtcagtaatgtaactaagagagagtgtgtagaaagtgttgttaaaagtgaatcatactttgagagtgaagcaagttcactcttatata 25333851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 607 - 842
Target Start/End: Original strand, 25537334 - 25537569
Alignment:
Q  607 aatgctccggtgtgacggtgaaggcttctgatacagcggcgaagaatccttgcggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaa 706  Q
    ||||||| ||||||||||| | || |||||  || |||||||||| || | |||||||||||||||||| ||||| |||||||| | ||  |||||||||    
T  25537334 aatgctctggtgtgacggtaacggtttctggcacggcggcgaagagtcttcgcggtggaacgaaaggtgcctgcaagcacgttagcactccaacgctcaa 25537433  T
Q  707 ctcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtaccttaaggatgaagcaagttcactcttatataggcacgctttga 806  Q
         ||||| |||| ||||||| ||| ||  ||||||||||||||  ||    |||||| ||| ||||| |||||||| ||||||||||| ||| |||     
T  25537434 gattgtaatggaactgagaaagattgtgtatgaagtgttgtgaaaagtgatgtataccttgagggtgaagaaagttcacccttatataggcgcgccttgg 25537533  T
Q  807 gcataactgtctccggattatgcggcatgtgattag 842  Q
     || ||| |||||| | ||||| | | |||||||||    
T  25537534 ccaaaaccgtctccaggttatgtgacgtgtgattag 25537569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 658 - 822
Target Start/End: Original strand, 20025263 - 20025426
Alignment:
Q  658 gcggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaa 757  Q
    ||||||| ||||||||||||||||  ||||||||| ||  ||||||    |||  ||||||||| ||||||||||| |||||||||||||| |||  |||    
T  20025263 gcggtgggacgaaaggtgtctgcacacacgttaacactccaacgctactgtcaggaatgaaactgagaaagagtgtgtagaaagtgttgtgtaaagtgaa 20025362  T
Q  758 tcgtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccgg 822  Q
    || | |||| ||| |||||| || |||| |||||| |||| |||  |||| ||||| ||||||||    
T  20025363 tcattccttgagggtgaagctaggtcacccttatacaggcgcgc-gtgagaataaccgtctccgg 20025426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 659 - 733
Target Start/End: Original strand, 16621189 - 16621263
Alignment:
Q  659 cggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgt 733  Q
    |||||||||||||||||| || |||||||||||| ||| |||||||||  ||||| || |||| |||||||||||    
T  16621189 cggtggaacgaaaggtgtatgtaggcacgttaacacttcaacgctcaagccaatattggaactgagaaagagtgt 16621263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 657 - 723
Target Start/End: Complemental strand, 26348191 - 26348125
Alignment:
Q  657 tgcggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaa 723  Q
    |||||||||||||||||||||||||||||||||| | ||  ||||||||| ||| ||||| ||||||    
T  26348191 tgcggtggaacgaaaggtgtctgcaggcacgttagcactccaacgctcaagtcattaatggaactaa 26348125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 760 - 842
Target Start/End: Original strand, 18799861 - 18799943
Alignment:
Q  760 gtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattag 842  Q
    ||||||| | |||||||||||||||| ||||||||||| ||||    ||||||| ||||| || ||||| ||| |||||||||    
T  18799861 gtaccttgatgatgaagcaagttcacccttatataggcgcgctcgaggcataaccgtctctgggttatgtggcgtgtgattag 18799943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 660 - 690
Target Start/End: Original strand, 24546329 - 24546359
Alignment:
Q  660 ggtggaacgaaaggtgtctgcaggcacgtta 690  Q
    |||||||||||||||||||||||||||||||    
T  24546329 ggtggaacgaaaggtgtctgcaggcacgtta 24546359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 760 - 842
Target Start/End: Complemental strand, 31202384 - 31202302
Alignment:
Q  760 gtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattag 842  Q
    ||||||| ||| |||||||||||||| ||||||||||| | | |||  |||||| |||||  | ||||||||| |||||||||    
T  31202384 gtaccttgagggtgaagcaagttcacccttatataggcgcacgttggtcataaccgtctctaggttatgcggcgtgtgattag 31202302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 5e-37; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 670 - 841
Target Start/End: Original strand, 21416730 - 21416901
Alignment:
Q  670 aaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtaccttaag 769  Q
    |||||||||||| || ||||| | ||   |||||||| ||| |||||||||| ||||||||||| ||||||||||||||||||  |||||||||||||||    
T  21416730 aaggtgtctgcatgctcgttagcactccgacgctcaagtcagtaatgaaactgagaaagagtgtgtagaaagtgttgtgaaaaatgaatcgtaccttaag 21416829  T
Q  770 gatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgatta 841  Q
    | |||||||||||||| ||| ||||||  ||| ||| ||||||| |||||||| ||||||||| ||||||||    
T  21416830 ggtgaagcaagttcacccttgtataggggcgcgttgggcataaccgtctccgggttatgcggcctgtgatta 21416901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 575 - 796
Target Start/End: Original strand, 24507355 - 24507575
Alignment:
Q  575 gtgaggatggatgagtggcaaccgtggcggaaaatgctccggtgtgacggtgaaggcttctgatacagcggcgaagaatccttgcggtggaacgaaaggt 674  Q
    ||||||||||||||| |||||| ||| |||| |||||||| |||||||||||| || ||| | ||| ||||  | || || |||||||||| ||||||||    
T  24507355 gtgaggatggatgagaggcaacggtgacggataatgctccagtgtgacggtgacggtttcgg-tacggcggtaatgagtctttgcggtggagcgaaaggt 24507453  T
Q  675 gtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtaccttaaggatga 774  Q
    ||||||| ||||||||   ||  |||| |||| ||||||||| || | ||||||||||| ||||||||||||||||||  ||||| |||||| ||| |||    
T  24507454 gtctgcatgcacgttagtactccaacgatcaagtcaataatggaaatgagaaagagtgtctagaaagtgttgtgaaaagtgaatcataccttgagggtga 24507553  T
Q  775 agcaagttcactcttatatagg 796  Q
    || | |||||| | ||||||||    
T  24507554 agtaggttcacccatatatagg 24507575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 666 - 842
Target Start/End: Original strand, 13754746 - 13754921
Alignment:
Q  666 acgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtacct 765  Q
    |||||||||| |||| ||||||||||| ||  | ||||||| ||| |||||||||| ||||||||||| |||||||||||||| |||  ||||| |||||    
T  13754746 acgaaaggtgcctgctggcacgttaacactacatcgctcaagtcagtaatgaaactgagaaagagtgtgtagaaagtgttgtgtaaagtgaatcctacct 13754845  T
Q  766 taaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattag 842  Q
    | ||| |||||| |  ||||||||||||||||||||  |||| ||||| |||| |||||| |||||| |||||||||    
T  13754846 tgagggtgaagctaagtcactcttatataggcacgc-atgagaataaccgtcttcggattttgcggcgtgtgattag 13754921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 661 - 842
Target Start/End: Complemental strand, 24576691 - 24576510
Alignment:
Q  661 gtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaat-c 759  Q
    ||||||||||||||| |||||||||||||||| || | |||||||| ||| ||||| |||||| || |||||| ||  |||||||||||||| | |||      
T  24576691 gtggaacgaaaggtgcctgcaggcacgttaacactctgacgctcaagtcagtaatggaactaaaaatgagtgtgtaagaagtgttgtgaaaa-gtaatgt 24576593  T
Q  760 gtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattag 842  Q
    ||||||| ||| ||||| |||||||| ||||||||||||||| |||| |||||| | |||| | ||||||| | |||||||||    
T  24576592 gtaccttgagggtgaaggaagttcacccttatataggcacgcgttgatcataaccgcctccaggttatgcgacgtgtgattag 24576510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 658 - 859
Target Start/End: Original strand, 18322923 - 18323124
Alignment:
Q  658 gcggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaa 757  Q
    |||||||||| |||||||  ||||| || |||||| ||  ||||||||| ||| ||||  |||| ||||||| ||| |||||| |||||||||||  |||    
T  18322923 gcggtggaacaaaaggtgcatgcagacatgttaacactccaacgctcaagtcagtaatagaactgagaaagattgtgtagaaaatgttgtgaaaagtgaa 18323022  T
Q  758 tcgtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattagaggcggttataggac 857  Q
    || ||| || ||||||||||||| |||| |||||||||||| |  ||||| ||||||| |||||| ||  ||||| ||||||||| |  ||||| |||||    
T  18323023 tcatacattgaggatgaagcaaggtcacccttatataggcaagagttgagaataactgcctccgggtttcgcggcgtgtgattagggatggttagaggac 18323122  T
Q  858 ac 859  Q
    ||    
T  18323123 ac 18323124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 662 - 842
Target Start/End: Complemental strand, 26917005 - 26916825
Alignment:
Q  662 tggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgt 761  Q
    ||||||||||||||  |  |||||||||| |||  |||||||||| ||| ||||| |||| ||| ||||||| ||||||||||||||||||  || || |    
T  26917005 tggaacgaaaggtgcatttaggcacgttagcgcactaacgctcaagtcagtaatggaactgagagagagtgtgtagaaagtgttgtgaaaagtgagtcat 26916906  T
Q  762 accttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattag 842  Q
    ||||| || |||||||||  || | ||||||||||| ||| ||||| ||||| | |||| | || |||||| |||||||||    
T  26916905 accttgagcatgaagcaatgtcgcccttatataggcgcgcgttgagaataaccgcctccaggttttgcggcgtgtgattag 26916825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 666 - 797
Target Start/End: Original strand, 30477629 - 30477760
Alignment:
Q  666 acgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtacct 765  Q
    ||||||| |||||||| |||||||| | ||  ||||||||| ||| ||| |||||| ||||||||||| ||||||||||||||||||  ||||| |||||    
T  30477629 acgaaagatgtctgcatgcacgttagcactccaacgctcaagtcagtaacgaaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaatcatacct 30477728  T
Q  766 taaggatgaagcaagttcactcttatataggc 797  Q
    | ||| ||||| ||  |||| |||||||||||    
T  30477729 tgagggtgaagtaatgtcacccttatataggc 30477760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 677 - 863
Target Start/End: Original strand, 5859814 - 5860000
Alignment:
Q  677 ctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtaccttaaggatgaag 776  Q
    |||||| ||||||| | ||  ||||||||| ||||||||| |||||||||| ||||| | || |||||| ||| ||  |||||||||||| ||  |||||    
T  5859814 ctgcagacacgttagcactccaacgctcaagtcaataatggaactaagaaatagtgtgttgagagtgttttgagaagtgaatcgtaccttgagattgaag 5859913  T
Q  777 caagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattagaggcggttataggacacgtgt 863  Q
    |||| |||| ||||||||||| ||| |||   ||||| | ||| ||||| ||||||  |||||||| | |||||| | |||||||||    
T  5859914 caaggtcacccttatataggcgcgcgttggaaataaccgcctctggattttgcggcgagtgattagggacggttaaatgacacgtgt 5860000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 667 - 797
Target Start/End: Complemental strand, 3459586 - 3459456
Alignment:
Q  667 cgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgtt-gtgaaaatggaatcgtacct 765  Q
    ||||||||| |||||||||||||| | ||    ||||||| ||| ||||| |||| || |||||||| ||||||||||| |||||||   ||||||||||    
T  3459586 cgaaaggtgcctgcaggcacgttagcactccggcgctcaagtcagtaatggaactgagcaagagtgtgtagaaagtgttggtgaaaagtaaatcgtacct 3459487  T
Q  766 taaggatgaagcaagttcactcttatataggc 797  Q
    | ||| |||||||||||||| |||||||||||    
T  3459486 tgagg-tgaagcaagttcacccttatataggc 3459456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 657 - 839
Target Start/End: Complemental strand, 4565505 - 4565323
Alignment:
Q  657 tgcggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatgga 756  Q
    ||||||||||||||||||||||||||||| |||| | ||   ||  |||| | | |||||||||| | | |||  |||||  ||||||||||||||  |     
T  4565505 tgcggtggaacgaaaggtgtctgcaggcatgttagcactccgacaatcaagttagtaatgaaactgaaagagaaagtataagaagtgttgtgaaaagtgt 4565406  T
Q  757 atcgtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgat 839  Q
       ||||||| ||| |||||||||||||| |||||||| || ||||    |||||||||||||||| ||||||||| ||||||    
T  4565405 tgtgtaccttgagggtgaagcaagttcacccttatataagcgcgctcgtggcataactgtctccgggttatgcggcgtgtgat 4565323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 723 - 859
Target Start/End: Complemental strand, 17698331 - 17698195
Alignment:
Q  723 agaaagagtgtatagaaagtgttgtgaaaatggaatcgtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccgg 822  Q
    ||||||||||| ||||||||||||||||||  ||||  ||| || ||| |||||||||  ||| | ||||||||| ||| | ||||||||| |||| ||     
T  17698331 agaaagagtgtgtagaaagtgttgtgaaaagtgaattatactttgagggtgaagcaaggccacccatatataggcgcgcgtcgagcataaccgtcttcga 17698232  T
Q  823 attatgcggcatgtgattagaggcggttataggacac 859  Q
    |||  ||||| ||||||||| | |||||| |||||||    
T  17698231 atttagcggcgtgtgattagggacggttaaaggacac 17698195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 702 - 775
Target Start/End: Complemental strand, 6928157 - 6928084
Alignment:
Q  702 ctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtaccttaaggatgaa 775  Q
    ||||| ||| ||||| |||| ||||||||||| ||||||||||||||||||  ||||| |||||| ||| ||||    
T  6928157 ctcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaatcataccttgagggtgaa 6928084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 629 - 690
Target Start/End: Original strand, 20055530 - 20055591
Alignment:
Q  629 ggcttctgatacagcggcgaagaatccttgcggtggaacgaaaggtgtctgcaggcacgtta 690  Q
    |||||| | ||| ||||||| ||||| | ||||||||||||| |||||||||||||||||||    
T  20055530 ggcttccggtacggcggcgatgaatcttcgcggtggaacgaagggtgtctgcaggcacgtta 20055591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 772 - 831
Target Start/End: Original strand, 16214721 - 16214780
Alignment:
Q  772 tgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcgg 831  Q
    |||||||||||||| ||||||||||| |||||   ||||||| |||||||| ||||||||    
T  16214721 tgaagcaagttcacccttatataggcgcgcttgtggcataaccgtctccgggttatgcgg 16214780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 656 - 743
Target Start/End: Original strand, 23269224 - 23269311
Alignment:
Q  656 ttgcggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtg 743  Q
    ||||||||||||||||||||||| |||||| |||| | ||  ||| || || ||| ||||| |||| | ||||||||| |||||||||    
T  23269224 ttgcggtggaacgaaaggtgtctacaggcaagttagcactccaacacttaagtcagtaatggaactgataaagagtgtgtagaaagtg 23269311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 561 - 607
Target Start/End: Complemental strand, 6928262 - 6928216
Alignment:
Q  561 ttttgatttgtctagtgaggatggatgagtggcaaccgtggcggaaa 607  Q
    ||||||| ||||| ||||||||||||||| |||||| ||||||||||    
T  6928262 ttttgatctgtctggtgaggatggatgagaggcaacagtggcggaaa 6928216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 660 - 794
Target Start/End: Original strand, 15058017 - 15058151
Alignment:
Q  660 ggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatc 759  Q
    ||||||||||||||||  ||||||||||||| | ||  ||||| ||| | | |||||||| | ||||| | ||| |||||||||| |||||||   ||||    
T  15058017 ggtggaacgaaaggtgcatgcaggcacgttagcactacaacgcacaagttagtaatgaaattgagaaaaaatgtgtagaaagtgtggtgaaaaataaatc 15058116  T
Q  760 gtaccttaaggatgaagcaagttcactcttatata 794  Q
     |||||| ||| |||| |||  |||| ||||||||    
T  15058117 ataccttgagggtgaaacaacgtcacacttatata 15058151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 733
Target Start/End: Complemental strand, 1909821 - 1909744
Alignment:
Q  656 ttgcggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgt 733  Q
    |||| |||||||||||||||  ||||| ||||||| |  || |||||| || ||| |||||||||| |||||||||||    
T  1909821 ttgcagtggaacgaaaggtgcatgcagacacgttagcatttcaacgctaaagtcagtaatgaaactgagaaagagtgt 1909744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 712 - 749
Target Start/End: Original strand, 24070886 - 24070923
Alignment:
Q  712 taatgaaactaagaaagagtgtatagaaagtgttgtga 749  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  24070886 taatggaactaagaaagagtgtgtagaaagtgttgtga 24070923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 3e-35; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 585 - 797
Target Start/End: Original strand, 26977647 - 26977859
Alignment:
Q  585 atgagtggcaaccgtggcggaaaatgctccggtgtgacggtgaaggcttctgatacagcggcgaagaatccttgcggtggaacgaaaggtgtctgcaggc 684  Q
    |||||||||||| |||||||||| ||||  ||| |||| || | || ||| | |||||||| || ||||| |||||||||||||||||||| ||||||||    
T  26977647 atgagtggcaacggtggcggaaagtgctatggtatgacagtaacggtttccggtacagcggtgatgaatctttgcggtggaacgaaaggtgcctgcaggc 26977746  T
Q  685 acgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtaccttaaggatgaagcaagttca 784  Q
    |||||| | ||  ||||||||| ||| ||||| |||  ||||||||||| |||||||| |||||||||  ||||| |||||| ||| |||||||| || |    
T  26977747 acgttagcactccaacgctcaagtcagtaatggaaccgagaaagagtgtgtagaaagtattgtgaaaaatgaatcataccttgagggtgaagcaatttga 26977846  T
Q  785 ctcttatataggc 797  Q
    | |||||||||||    
T  26977847 cccttatataggc 26977859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 575 - 841
Target Start/End: Original strand, 22414672 - 22414938
Alignment:
Q  575 gtgaggatggatgagtggcaaccgtggcggaaaatgctccggtgtgacggtgaaggcttctgatacagcggcgaagaatccttgcggtggaacgaaaggt 674  Q
    |||||||||||||||||||||| |||||  | ||||||||| ||||||   || || |||   ||| | | ||| || || |||||||||||||||||||    
T  22414672 gtgaggatggatgagtggcaacagtggcaaataatgctccgttgtgacaacgacggtttccagtacggtgacgatgagtctttgcggtggaacgaaaggt 22414771  T
Q  675 gtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtaccttaaggatga 774  Q
    | | |||||||||||| | || | |||||||| ||| |||||||||| | ||| ||||| ||||||||||||||||||  ||||| || ||| ||| |||    
T  22414772 gcccgcaggcacgttagcactctgacgctcaagtcagtaatgaaactgaaaaaaagtgtgtagaaagtgttgtgaaaagtgaatcatatcttgagggtga 22414871  T
Q  775 agcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgatta 841  Q
    ||||||||||  ||| |||||||| || | ||||||||| |||||||  ||||||||| | ||||||    
T  22414872 agcaagttcatccttgtataggcatgcgtcgagcataacggtctccgtgttatgcggcgtatgatta 22414938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 658 - 842
Target Start/End: Original strand, 12177366 - 12177550
Alignment:
Q  658 gcggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaa 757  Q
    |||||||||||||||||| || || |||||||| | ||   || ||||| ||| ||||| |||| ||||||||||| ||||||||||||||||||  |||    
T  12177366 gcggtggaacgaaaggtgcctacatgcacgttagcactccgacactcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaa 12177465  T
Q  758 tcgtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattag 842  Q
    |  |||||| |||| ||||||||||||  ||||||||||  ||| ||| |||||||||||||||  ||||||||||| |||||||    
T  12177466 ttataccttgaggaggaagcaagttcaaccttatataggtgcgcattgggcataactgtctccgagttatgcggcatttgattag 12177550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 563 - 842
Target Start/End: Complemental strand, 14255236 - 14254969
Alignment:
Q  563 ttgatttgtctagtgaggatggatgagtggcaaccgtggcggaaaatgctccggtgtgacggtgaaggcttctgatacagcggcgaagaatccttgcggt 662  Q
    ||||| ||||||||||| | || ||||| ||||| | ||| || ||||||||||||||||||| | |||||| |   | ||||||| || || | | |||    
T  14255236 ttgatctgtctagtgagaacggttgagtagcaacggcggcagagaatgctccggtgtgacggtaatggcttccggcgcggcggcgatgagtcttcgtggt 14255137  T
Q  663 ggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgta 762  Q
    |||||||| |||| ||||| ||||| || | ||  ||||||||| ||| |||||||||| ||||||||||| ||  |||||||||            |||    
T  14255136 ggaacgaagggtgcctgcaagcacgatagcactccaacgctcaagtcattaatgaaactgagaaagagtgtgtaagaagtgttgt------------gta 14255049  T
Q  763 ccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattag 842  Q
    |||| ||| |||| ||||||||| |||||||||||||||||||  ||||||| ||||| | ||||||||| | |||||||    
T  14255048 ccttgagggtgaaacaagttcacccttatataggcacgctttggtcataactttctccaggttatgcggcgtatgattag 14254969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 563 - 842
Target Start/End: Complemental strand, 4601693 - 4601414
Alignment:
Q  563 ttgatttgtctagtgaggatggatgagtggcaaccgtggcggaaaatgctccggtgtgacggtgaaggcttctgatacagcggcgaagaatccttgcggt 662  Q
    ||||| ||||| ||||| | || ||||| ||||| ||||| |||||||||| ||||||||||| |  | ||| |  |  |||||||  | || | |||||    
T  4601693 ttgatctgtctggtgagaacggttgagtagcaacggtggcagaaaatgctctggtgtgacggtaattgtttccggcatggcggcgataagtcttcgcggt 4601594  T
Q  663 ggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgta 762  Q
    ||||||||||||| |||||||||||||| | ||   |||||||| ||| |||||||||| ||||| | ||| ||  ||||| ||||||| | ||   ||     
T  4601593 ggaacgaaaggtgactgcaggcacgttagcactccgacgctcaagtcagtaatgaaactgagaaataatgtgtaataagtgctgtgaaatttgatgtgtc 4601494  T
Q  763 ccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattag 842  Q
    |||| ||| |||||||||||||| |||||||| || ||| |||  |||| | |||||||| ||||||| | |||||||||    
T  4601493 ccttgagggtgaagcaagttcacccttatatacgcgcgcattggtcatagccgtctccgggttatgcgccgtgtgattag 4601414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 658 - 863
Target Start/End: Original strand, 16050374 - 16050579
Alignment:
Q  658 gcggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaa 757  Q
    ||||||||  ||||||| ||||||||||||||| | ||  ||||||||| ||| | ||| |||| ||||||||||| |||||||||| |||||||  |||    
T  16050374 gcggtggatagaaaggtatctgcaggcacgttagcactccaacgctcaagtcattgatggaactgagaaagagtgtgtagaaagtgtggtgaaaagtgaa 16050473  T
Q  758 tcgtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattagaggcggttataggac 857  Q
     | |||||| ||||||||||||   ||| ||||||||||  ||| ||| | |||| |   |||||||| |||||  |||||||| || | |||| |||||    
T  16050474 ccataccttgaggatgaagcaatgccacccttatataggtgcgcattgggaataaatcattccggattttgcggtgtgtgattaaagacagttagaggac 16050573  T
Q  858 acgtgt 863  Q
    ||||||    
T  16050574 acgtgt 16050579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 664 - 842
Target Start/End: Complemental strand, 23728925 - 23728747
Alignment:
Q  664 gaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtac 763  Q
    ||||||||||||  ||||||||||||| |  | | |||||||| ||| ||||| || | ||||||||||| ||  ||||||||||||||  ||   ||||    
T  23728925 gaacgaaaggtggatgcaggcacgttagcattatgacgctcaagtcattaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtac 23728826  T
Q  764 cttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattag 842  Q
    ||| ||| |||| ||||||||| ||||||||||| | | |||  |||||| |||| |  ||||||||||||||||||||    
T  23728825 cttgagggtgaaacaagttcacccttatataggcgcacgttggccataaccgtcttcaaattatgcggcatgtgattag 23728747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 657 - 848
Target Start/End: Original strand, 25408075 - 25408266
Alignment:
Q  657 tgcggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatgga 756  Q
    |||||||||| |||||||| |||||| ||||||| | ||  || |||||| ||| |||||||||| | | ||||||| ||  ||||||||||||||  ||    
T  25408075 tgcggtggaatgaaaggtgcctgcagacacgttagcactccaatgctcaagtcagtaatgaaactgaaagagagtgtgtaagaagtgttgtgaaaagtga 25408174  T
Q  757 atcgtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattagaggcgg 848  Q
       || |||| ||| |||||||||||||| |||  ||||||  | ||||  ||||||||||||||| ||||  ||| |||||||||| ||||    
T  25408175 tgtgtcccttgagggtgaagcaagttcaccctttcataggcgtgttttgttcataactgtctccgggttataaggcgtgtgattagaagcgg 25408266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 575 - 794
Target Start/End: Complemental strand, 23280454 - 23280237
Alignment:
Q  575 gtgaggatggatgagtggcaaccgtggcggaaaatgctccggtgtgacggtgaaggcttctgatacagcggcgaagaatccttgcggtggaacgaaaggt 674  Q
    ||||||||| |||||||||||| |||||||||| ||||| |||| |||||||| || ||| | ||    || || ||||||||| | |||||||||||||    
T  23280454 gtgaggatgaatgagtggcaacggtggcggaaagtgctctggtgagacggtgacggtttccggtatgttggtgatgaatccttgtgatggaacgaaaggt 23280355  T
Q  675 gtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtaccttaaggatga 774  Q
    | |||||| || |||| | ||  ||| ||||| ||| ||||| |||| |||||| |||| |  | |||||||||||||  ||||  | || | ||| |||    
T  23280354 gcctgcagacatgttatcactcaaactctcaagtcagtaatggaactgagaaagtgtgtgt--atagtgttgtgaaaagtgaataatgccatgagggtga 23280257  T
Q  775 agcaagttcactcttatata 794  Q
    |||||||||||  |||||||    
T  23280256 agcaagttcacctttatata 23280237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 659 - 766
Target Start/End: Original strand, 16030376 - 16030483
Alignment:
Q  659 cggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaat 758  Q
    |||||||| ||||||||||||||||||||||| |  |  || |||||| ||| ||||| |||| |  |||||||| ||||||||||||||||||  ||||    
T  16030376 cggtggaatgaaaggtgtctgcaggcacgttatcagtcaaatgctcaagtcagtaatggaactgaataagagtgtgtagaaagtgttgtgaaaagtgaat 16030475  T
Q  759 cgtacctt 766  Q
    | ||||||    
T  16030476 catacctt 16030483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 662 - 793
Target Start/End: Original strand, 52565564 - 52565695
Alignment:
Q  662 tggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgt 761  Q
    |||||||||||||| |||||| ||||||| | || | |||||||| ||| ||| | |||| | ||||||||   |||||||||||||||||  ||||| |    
T  52565564 tggaacgaaaggtgcctgcagacacgttagcactctgacgctcaagtcagtaaaggaactgaaaaagagtgcgcagaaagtgttgtgaaaagtgaatcat 52565663  T
Q  762 accttaaggatgaagcaagttcactcttatat 793  Q
    | ||| ||| |||||||||||||  |||||||    
T  52565664 aacttgagggtgaagcaagttcatccttatat 52565695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 656 - 796
Target Start/End: Original strand, 34273065 - 34273205
Alignment:
Q  656 ttgcggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatgg 755  Q
    ||||||||| |||||||||  ||||| |||||||| | ||  || |||||| ||| ||| | |||| ||||||||||| |||||||||||||| |||  |    
T  34273065 ttgcggtgggacgaaaggtacctgcaagcacgttagcactccaatgctcaagtcagtaacggaactgagaaagagtgtgtagaaagtgttgtgtaaagtg 34273164  T
Q  756 aatcgtaccttaaggatgaagcaagttcactcttatatagg 796  Q
    | || |||||| ||| ||||||||  || | ||||||||||    
T  34273165 actcataccttgagggtgaagcaatgtcgcccttatatagg 34273205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 669 - 752
Target Start/End: Original strand, 5671761 - 5671844
Alignment:
Q  669 aaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaa 752  Q
    |||||||| || |||||||||| | ||  ||||||||| | | ||||| |||| ||||||||||| ||||||||||||||||||    
T  5671761 aaaggtgtttgtaggcacgttagcactccaacgctcaagttagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaa 5671844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 586 - 752
Target Start/End: Complemental strand, 16299756 - 16299591
Alignment:
Q  586 tgagtggcaaccgtggcggaaaatgctccggtgtgacggtgaaggcttctgatacagcggcgaagaatccttgcggtggaacgaaaggtgtctgcaggca 685  Q
    ||||||||||| | ||  || ||||||||||||| || || | | |||| ||||| ||||||| || || |||||||||||||||| ||||||||| |||    
T  16299756 tgagtggcaacagcggtagagaatgctccggtgttaccgtaacgacttccgatacggcggcgatgagtc-ttgcggtggaacgaaacgtgtctgcatgca 16299658  T
Q  686 cgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaa 752  Q
    | ||| | ||   ||| |||| | | |||||||||| ||||||||||  ||  ||||||||||||||    
T  16299657 cattagcactccgacgttcaagtaagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaa 16299591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 659 - 752
Target Start/End: Complemental strand, 1659899 - 1659806
Alignment:
Q  659 cggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaa 752  Q
    |||||||||||||||||||| ||  ||||||| | ||  ||||||||| ||||||||| | || ||||||| ||| ||  ||||||||||||||    
T  1659899 cggtggaacgaaaggtgtctacatacacgttatcactccaacgctcaagtcaataatggatctgagaaagaatgtgtaagaagtgttgtgaaaa 1659806  T

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Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 668 - 752
Target Start/End: Complemental strand, 33101608 - 33101524
Alignment:
Q  668 gaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaa 752  Q
    ||||||||  ||||||||||||| | ||  ||||||||| ||  ||||| |||| ||||| ||||| ||||||||||||||||||    
T  33101608 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgtgtagaaagtgttgtgaaaa 33101524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 662 - 732
Target Start/End: Original strand, 16522759 - 16522829
Alignment:
Q  662 tggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtg 732  Q
    |||||||||||||||||| |||||||||| | ||| |||| |||| ||||||| | || | ||||||||||    
T  16522759 tggaacgaaaggtgtctgaaggcacgttagcacttcaacgttcaagtcaataaaggaattgagaaagagtg 16522829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 772 - 841
Target Start/End: Original strand, 3590921 - 3590990
Alignment:
Q  772 tgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgatta 841  Q
    |||||||||||||| ||||||||||| | || |  ||||||| |||||||| ||||||||| | ||||||    
T  3590921 tgaagcaagttcacccttatataggcgcactcttggcataaccgtctccgggttatgcggcgtatgatta 3590990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 71; Significance: 1e-31; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 576 - 863
Target Start/End: Complemental strand, 8769 - 8487
Alignment:
Q  576 tgaggatggatgagtggcaaccgtggcggaaaatgctccggtgtgacggtgaaggcttctgatacagcggcgaagaatccttgcggtggaacgaaaggtg 675  Q
    ||||||| |||||||| |||| |||||||| ||||||||| |||||| || |  | |||   ||| ||||||  || || |||||||||||  |||||||    
T  8769 tgaggatagatgagtgacaacggtggcggataatgctccgctgtgacagtaacagtttccagtacggcggcgttgagtctttgcggtggaataaaaggtg 8670  T
Q  676 tctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtaccttaaggatgaa 775  Q
    | ||||| ||||||| | |||  |||||||| ||| |||||||||| | ||| ||||| ||||||||||||||||||  ||||| |||||||||| ||||    
T  8669 tttgcag-cacgttagcacttcgacgctcaagtcagtaatgaaactgaaaaacagtgtgtagaaagtgttgtgaaaagtgaatcataccttaagggtgaa 8571  T
Q  776 gcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattagaggcggttataggacacgtgt 863  Q
         ||||| ||||||||||| ||| ||||||||||| |||||||| |||||| || | |||||||||  ||||| | |||||||||    
T  8570 c----ttcacccttatataggcgcgcgttgagcataaccgtctccgggttatgcagcgtttgattagagaaggttagatgacacgtgt 8487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 699 - 842
Target Start/End: Complemental strand, 15500 - 15357
Alignment:
Q  699 acgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtaccttaaggatgaagcaagttcactcttatataggca 798  Q
    |||||| | ||| ||||| |||| ||||||||| | ||||||||||||||||||  ||||| |||||| ||| |||||||||||||| ||||||||||      
T  15500 acgctccagtcagtaatggaactgagaaagagtatctagaaagtgttgtgaaaagtgaatcataccttgagggtgaagcaagttcacccttatataggtg 15401  T
Q  799 cgctttgagcataactgtctccggattatgcggcatgtgattag 842  Q
    | | ||   |||||| || ||||||||||||| |||||||||||    
T  15400 cacgttagtcataaccgtgtccggattatgcgacatgtgattag 15357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 4e-31; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 575 - 752
Target Start/End: Original strand, 39879284 - 39879461
Alignment:
Q  575 gtgaggatggatgagtggcaaccgtggcggaaaatgctccggtgtgacggtgaaggcttctgatacagcggcgaagaatccttgcggtggaacgaaaggt 674  Q
    ||||| ||||||||| | |||| |||| ||||| ||||||||||||||||||| || ||| ||||| |    || ||||| | | |||||||||||||||    
T  39879284 gtgagaatggatgagagacaacggtggtggaaagtgctccggtgtgacggtgatggtttccgatacggtaatgatgaatcttcgtggtggaacgaaaggt 39879383  T
Q  675 gtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaa 752  Q
    | |||||| ||||||||| ||||||||||||| ||| |||||||||| ||||||||||| || |||||||||| ||||    
T  39879384 gcctgcagacacgttaacactttaacgctcaagtcagtaatgaaactgagaaagagtgtgtaaaaagtgttgtaaaaa 39879461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 660 - 842
Target Start/End: Complemental strand, 13292232 - 13292050
Alignment:
Q  660 ggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatc 759  Q
    ||||||| |||||||||||||||| |||||| | || |||||||||| ||| |||||||||| | ||||||||| ||  ||||||||||||||  ||       
T  13292232 ggtggaaggaaaggtgtctgcaggtacgttagcactctaacgctcaagtcagtaatgaaactgaaaaagagtgtgtaagaagtgttgtgaaaagtgatgt 13292133  T
Q  760 gtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattag 842  Q
    ||||||| ||| ||||||||||||||  |||||||||| ||| |||  |||||| |||||||| ||||||||| |||| ||||    
T  13292132 gtaccttgagggtgaagcaagttcaccattatataggcgcgcgttggccataaccgtctccgggttatgcggcgtgtggttag 13292050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 607 - 842
Target Start/End: Complemental strand, 16987254 - 16987019
Alignment:
Q  607 aatgctccggtgtgacggtgaaggcttctgatacagcggcgaagaatccttgcggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaa 706  Q
    ||||||||||||||||| | | |||||||| ||| ||||| | || || | ||||||||||||||||||  ||| ||||||||| | || | || |||||    
T  16987254 aatgctccggtgtgacgctaacggcttctggtacggcggcaatgagtcttcgcggtggaacgaaaggtgcatgcgggcacgttagcactctgacactcaa 16987155  T
Q  707 ctcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtaccttaaggatgaagcaagttcactcttatataggcacgctttga 806  Q
      || ||||| || | ||||||||||| ||  ||||||||||||||  ||   || |||||| | |||||||||||||| ||||||||||| ||| |||     
T  16987154 gccagtaatggaattgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtcccttaaaggtgaagcaagttcacccttatataggcgcgcgttgg 16987055  T
Q  807 gcataactgtctccggattatgcggcatgtgattag 842  Q
     |||||| |||||||||||||||||  |||||||||    
T  16987054 ccataaccgtctccggattatgcggtgtgtgattag 16987019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 659 - 842
Target Start/End: Complemental strand, 9135471 - 9135288
Alignment:
Q  659 cggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaat 758  Q
    |||||||||||||||||  |  |||||||||| | || |||||||||| ||| ||||| || | ||||||||||| || ||| |||||||||||  ||||    
T  9135471 cggtggaacgaaaggtgcatataggcacgttagcactctaacgctcaagtcagtaatggaattgagaaagagtgtgtaaaaactgttgtgaaaagtgaat 9135372  T
Q  759 cgtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattag 842  Q
    | |||||| ||| |||||||| ||||| ||||||||| ||||  |||  |||||| |||||||| |||||  || |||||||||    
T  9135371 cataccttgagggtgaagcaaattcacccttatatagacacgtattggtcataaccgtctccgggttatgtagcgtgtgattag 9135288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 656 - 792
Target Start/End: Original strand, 7486523 - 7486659
Alignment:
Q  656 ttgcggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatgg 755  Q
    ||||||||||| ||||||||  ||||||||||||| | ||  ||||||||| ||| ||||| |||| ||||||| ||| ||||| ||||||||||||  |    
T  7486523 ttgcggtggaatgaaaggtgcatgcaggcacgttagcactccaacgctcaattcagtaatggaactgagaaagattgtgtagaaggtgttgtgaaaagtg 7486622  T
Q  756 aatcgtaccttaaggatgaagcaagttcactcttata 792  Q
    |||| | |||||| | ||||| |||||||| ||||||    
T  7486623 aatcatcccttaaaggtgaagaaagttcacccttata 7486659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 658 - 752
Target Start/End: Original strand, 21161222 - 21161315
Alignment:
Q  658 gcggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaa 752  Q
    ||||||||||||||| ||||||||||||||||| | ||  ||||||||| ||| ||||| | ||||||||| |||| ||||||||||||||||||    
T  21161222 gcggtggaacgaaag-tgtctgcaggcacgttagcactccaacgctcaagtcagtaatggagctaagaaagtgtgtgtagaaagtgttgtgaaaa 21161315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 651 - 797
Target Start/End: Complemental strand, 26763029 - 26762883
Alignment:
Q  651 aatccttgcggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaa 750  Q
    ||||||||||||||| ||||||||   ||||||||||||| | ||  ||||||||| ||| ||| | |||| | ||| ||||| ||||||||||||||||    
T  26763029 aatccttgcggtggagcgaaaggttcttgcaggcacgttagcactccaacgctcaagtcagtaaaggaactcataaatagtgtgtagaaagtgttgtgaa 26762930  T
Q  751 aatggaatcgtaccttaaggatgaagcaagttcactcttatataggc 797  Q
    ||  ||||| |||||| ||| |||||||||  ||| | |||||||||    
T  26762929 aagtgaatcataccttgagggtgaagcaaggacacccatatataggc 26762883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 659 - 848
Target Start/End: Complemental strand, 5925585 - 5925396
Alignment:
Q  659 cggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaat 758  Q
    |||||||||||||||||||||||||||||||| | ||  |||| |||| ||| ||||| |||| ||| |||  || ||  |||||| |||||||  |       
T  5925585 cggtggaacgaaaggtgtctgcaggcacgttagcactccaacgatcaagtcagtaatggaactgagagagaaagtctaagaagtgtcgtgaaaagtgttg 5925486  T
Q  759 cgtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattagaggcgg 848  Q
     || |||| ||| |||||||||||||| ||||| ||||| ||||    ||||||| |||||||| ||||||||| ||||||  |||||||    
T  5925485 tgttccttgagggtgaagcaagttcacccttatgtaggcgcgctcgtggcataaccgtctccgggttatgcggcgtgtgatctgaggcgg 5925396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 738 - 842
Target Start/End: Complemental strand, 12265156 - 12265052
Alignment:
Q  738 aaagtgttgtgaaaatggaatcgtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtg 837  Q
    |||||||||||||||  ||  |||||||| ||| | |||||||||||| ||||||||||||||||   ||||||||  ||||||| ||||||||| | ||    
T  12265156 aaagtgttgtgaaaagtgatgcgtaccttgagggtcaagcaagttcacccttatataggcacgctcgaagcataaccatctccgggttatgcggcgtatg 12265057  T
Q  838 attag 842  Q
    |||||    
T  12265056 attag 12265052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 565 - 863
Target Start/End: Original strand, 5863074 - 5863372
Alignment:
Q  565 gatttgtctagtgaggatggatgagtggcaaccgtggcggaaaatgctccggtgtgacggtgaaggcttctgatacagcggcgaagaatccttgcggtgg 664  Q
    |||||||| |||||||||||||||||||||||  ||| ||||| | |||  |||||| ||| | || ||  | ||| |  |||| || || |  |||| |    
T  5863074 gatttgtccagtgaggatggatgagtggcaacactggtggaaagttctctagtgtgatggtaacggttttcggtacggtagcgatgagtcttcacggtag 5863173  T
Q  665 aacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtacc 764  Q
    |||||||  ||  |||| |||||||| | ||  ||||||||| ||| ||||  |||| ||||||||||| |||||| |||||| ||||  ||||| ||||    
T  5863174 aacgaaatttgcgtgcaagcacgttagcactcaaacgctcaagtcagtaatcgaactgagaaagagtgtgtagaaaatgttgtaaaaagtgaatcatacc 5863273  T
Q  765 ttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattagaggcggttataggacacgtgt 863  Q
    || ||| || |||||  |||| ||| ||||||| ||| |||   ||||| | |||||| ||   |||||||||||||| | |||||| |||||||||||    
T  5863274 ttgagggtggagcaatgtcacccttgtataggcgcgcgttggaaataaccgcctccgggtttcacggcatgtgattagggacggttagaggacacgtgt 5863372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 740 - 842
Target Start/End: Complemental strand, 43172065 - 43171963
Alignment:
Q  740 agtgttgtgaaaatggaatcgtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgat 839  Q
    |||||||||||||  ||||| ||| || ||| |||||||| ||||| ||||||||||| ||  ||||| ||||||| |||||| || |||||||| ||||    
T  43172065 agtgttgtgaaaagtgaatcatacattgagggtgaagcaacttcacccttatataggcgcggattgagaataactgcctccgggttttgcggcatttgat 43171966  T
Q  840 tag 842  Q
    |||    
T  43171965 tag 43171963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 659 - 830
Target Start/End: Original strand, 12644766 - 12644938
Alignment:
Q  659 cggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttg-tgaaaatggaa 757  Q
    |||||||||||||||||  |||||||| |||| | ||   |||||||  ||| ||||| |||| ||||| ||||| | |||||||||| ||||||  |||    
T  12644766 cggtggaacgaaaggtgcatgcaggcaagttagcactccgacgctcaggtcagtaatggaactgagaaaaagtgtgtggaaagtgttggtgaaaagtgaa 12644865  T
Q  758 tcgtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcg 830  Q
    | |||| || ||| |||||||||||||| ||| || |||| ||| |||  |||||| |||| ||| |||||||    
T  12644866 ttgtacgttgagggtgaagcaagttcacccttgtagaggcgcgcgttggtcataaccgtcttcgggttatgcg 12644938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 723 - 797
Target Start/End: Original strand, 29373491 - 29373565
Alignment:
Q  723 agaaagagtgtatagaaagtgttgtgaaaatggaatcgtaccttaaggatgaagcaagttcactcttatataggc 797  Q
    ||||||||||| |||||| |||||||||||| ||||| |||||| ||| ||||||||  |||| || ||||||||    
T  29373491 agaaagagtgtgtagaaaatgttgtgaaaattgaatcataccttgagggtgaagcaatgtcaccctcatataggc 29373565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 658 - 771
Target Start/End: Complemental strand, 9868050 - 9867937
Alignment:
Q  658 gcggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaa 757  Q
    ||||||| ||||||||||  |||||| |||||| | || | |||||||| ||| ||||| |||| || |||||| | ||||||||||||| ||||  |||    
T  9868050 gcggtgggacgaaaggtgcatgcaggaacgttagcactctgacgctcaagtcagtaatggaactgaggaagagtttgtagaaagtgttgttaaaagtgaa 9867951  T
Q  758 tcgtaccttaagga 771  Q
    || |||||| ||||    
T  9867950 tcataccttgagga 9867937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 659 - 752
Target Start/End: Complemental strand, 10287706 - 10287613
Alignment:
Q  659 cggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaa 752  Q
    ||||||||| ||||||  |||||||||||||| | | ||||||||||| ||| ||||| | || ||||| ||||| ||  ||||||||||||||    
T  10287706 cggtggaaccaaaggttcctgcaggcacgttagcaccttaacgctcaagtcagtaatggatctgagaaaaagtgtgtaagaagtgttgtgaaaa 10287613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 660 - 797
Target Start/End: Original strand, 34854225 - 34854362
Alignment:
Q  660 ggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatc 759  Q
    ||||||||||| ||||| ||||| ||||||| | || | |||||||| | | |||||||||| ||||||||||| ||  || |||||||||||  ||       
T  34854225 ggtggaacgaacggtgtttgcagacacgttagcactctgacgctcaagttagtaatgaaactgagaaagagtgtgtaagaaatgttgtgaaaagtgatgt 34854324  T
Q  760 gtaccttaaggatgaagcaagttcactcttatataggc 797  Q
    ||||  | ||| |||| ||||||||| |||||||||||    
T  34854325 gtactctgagggtgaaacaagttcacccttatataggc 34854362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 727 - 796
Target Start/End: Original strand, 16204340 - 16204409
Alignment:
Q  727 agagtgtatagaaagtgttgtgaaaatggaatcgtaccttaaggatgaagcaagttcactcttatatagg 796  Q
    ||||||| || |||||||||||||||  ||| | |||||||||| ||||| || ||||| ||||||||||    
T  16204340 agagtgtgtataaagtgttgtgaaaagtgaaccataccttaagggtgaagaaaattcacccttatatagg 16204409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 760 - 841
Target Start/End: Original strand, 20034397 - 20034478
Alignment:
Q  760 gtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgatta 841  Q
    ||||||| ||| | |||||||| ||| ||||||||||| |||| |  |||| || |||||||| ||||||||||| ||||||    
T  20034397 gtaccttgagggtaaagcaagtacacccttatataggcccgctcttggcatgaccgtctccgggttatgcggcatatgatta 20034478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 6e-27; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 609 - 859
Target Start/End: Original strand, 3586294 - 3586544
Alignment:
Q  609 tgctccggtgtgacggtgaaggcttctgatacagcggcgaagaatccttgcggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaact 708  Q
    |||||||||||||||||||||| ||| | ||| ||| ||  || || ||||||||||| ||||||||  ||| |||||||||   ||   |||||||| |    
T  3586294 tgctccggtgtgacggtgaaggtttccggtacggcgacgttgagtctttgcggtggaatgaaaggtgcatgccggcacgttaggactccgacgctcaagt 3586393  T
Q  709 caataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtaccttaaggatgaagcaagttcactcttatataggcacgctttgagc 808  Q
    || ||||| |||| ||||| ||||  ||||||||||||||||||  ||||| |||||| ||| |||||||||||||| ||||||||||| ||| |||  |    
T  3586394 cagtaatggaactgagaaaaagtgagtagaaagtgttgtgaaaagtgaatcataccttgagggtgaagcaagttcacccttatataggcgcgcgttggtc 3586493  T
Q  809 ataactgtctccggattatgcggcatgtgattagaggcggttataggacac 859  Q
    ||||| |  ||  | ||||||||| ||||| ||| | |||||| |||||||    
T  3586494 ataaccgcttcttggttatgcggcgtgtgaatagggacggttagaggacac 3586544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 656 - 813
Target Start/End: Original strand, 12168950 - 12169108
Alignment:
Q  656 ttgcggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgct-caactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatg 754  Q
    ||||||||||||||||||||||||||||||| ||||| ||  |||||| ||| ||| ||||| |||||||||||||||| ||||||||||||||||||      
T  12168950 ttgcggtggaacgaaaggtgtctgcaggcacattaacactccaacgcttcaagtcagtaatggaactaagaaagagtgtgtagaaagtgttgtgaaaagt 12169049  T
Q  755 gaatcgtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataac 813  Q
    ||||  |||||| ||| ||||||||   ||| |||| |||||| ||| ||||| |||||    
T  12169050 gaattataccttgagggtgaagcaatgccacccttaaataggcgcgcgttgagaataac 12169108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 661 - 795
Target Start/End: Original strand, 36267481 - 36267615
Alignment:
Q  661 gtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcg 760  Q
    |||||| |||||||| ||||| ||| |||||| ||  ||||||||| ||| |||||||||| ||||||||||| ||||||| ||||||||||  |||||     
T  36267481 gtggaatgaaaggtgcctgcatgcatgttaacactccaacgctcaagtcagtaatgaaactgagaaagagtgtgtagaaagggttgtgaaaagtgaatca 36267580  T
Q  761 taccttaaggatgaagcaagttcactcttatatag 795  Q
    |||||| ||| |||||||||||||| |||||||||    
T  36267581 taccttgagggtgaagcaagttcacccttatatag 36267615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 658 - 796
Target Start/End: Complemental strand, 45258263 - 45258125
Alignment:
Q  658 gcggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaa 757  Q
    ||||||||||||||| ||||||||||||||||||| ||  || |||||| | | |||||||||||||||||| ||| | ||||||||||||||||  |||    
T  45258263 gcggtggaacgaaagatgtctgcaggcacgttaacactccaaagctcaagtaagtaatgaaactaagaaagaatgtgtcgaaagtgttgtgaaaagtgaa 45258164  T
Q  758 tcgtaccttaaggatgaagcaagttcactcttatatagg 796  Q
    || |||||| ||| ||||||||  |||| ||||||||||    
T  45258163 tcataccttgagggtgaagcaaagtcacccttatatagg 45258125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 660 - 837
Target Start/End: Original strand, 15825136 - 15825313
Alignment:
Q  660 ggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatc 759  Q
    |||||||||||| |||||||||||||||||| | |||| |||||||| ||  ||||| |||| ||||||||||| ||||||||||||||||||   |       
T  15825136 ggtggaacgaaatgtgtctgcaggcacgttagcactttgacgctcaagtcggtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtcatgt 15825235  T
Q  760 gtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtg 837  Q
    ||||||| ||| |||||||||||||| ||| ||||||| ||| |||  |||||| |||| ||  ||||||||| ||||    
T  15825236 gtaccttgagggtgaagcaagttcacccttgtataggcgcgcgttggtcataaccgtcttcgagttatgcggcgtgtg 15825313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 578 - 797
Target Start/End: Original strand, 24499695 - 24499908
Alignment:
Q  578 aggatggatgagtggcaaccgtggcggaaaatgctccggtgtgacggtgaaggcttctgatacagcggcgaagaatccttgcggtggaacgaaaggtgtc 677  Q
    |||||| || ||||||||| ||||||||||||| || |||||||||||      ||||| ||  ||| ||| |||||||| |  ||| |||||||||| |    
T  24499695 aggatgaataagtggcaacggtggcggaaaatgttctggtgtgacggt------ttctgctatggcgtcgatgaatccttacaatgggacgaaaggtgcc 24499788  T
Q  678 tgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtaccttaaggatgaagc 777  Q
    |  ||| |||||| | ||  ||||||||| ||| ||||| || | ||||||||||| |||||| |||||||||||  ||||| |||||||||| ||||||    
T  24499789 tctaggaacgttagcactccaacgctcaagtcagtaatggaaatgagaaagagtgtgtagaaaatgttgtgaaaagtgaatcataccttaagggtgaagc 24499888  T
Q  778 aagttcactcttatataggc 797  Q
    |||||||| |||||| ||||    
T  24499889 aagttcacccttataaaggc 24499908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 660 - 797
Target Start/End: Complemental strand, 19919175 - 19919038
Alignment:
Q  660 ggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatc 759  Q
    |||||||||||||||| ||||||| || |||   || ||||||  || ||||||||| || | ||||||||| | ||||||||||||||||||  |||||    
T  19919175 ggtggaacgaaaggtgcctgcaggaacattagaactctaacgccaaagtcaataatggaaatgagaaagagtatgtagaaagtgttgtgaaaagtgaatc 19919076  T
Q  760 gtaccttaaggatgaagcaagttcactcttatataggc 797  Q
     |||||| ||||||||||||  ||||||||||||||||    
T  19919075 ataccttgaggatgaagcaatatcactcttatataggc 19919038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 658 - 842
Target Start/End: Original strand, 29710998 - 29711180
Alignment:
Q  658 gcggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaa 757  Q
    |||||||||| |||||||| |||| |||||||| | ||  ||||||||| ||| ||||| || |  ||||||| || ||  ||||||||||||||  ||     
T  29710998 gcggtggaacaaaaggtgtatgcatgcacgttagcactccaacgctcaagtcactaatggaatt--gaaagagagtgtacgaagtgttgtgaaaagtgat 29711095  T
Q  758 tcgtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattag 842  Q
      ||||||| ||| |||||||||||||| ||||||||||| ||| ||| || |||| |||||||  |||||||||||||||||||    
T  29711096 gtgtaccttgagggtgaagcaagttcacccttatataggcgcgcattgggcttaaccgtctccgtgttatgcggcatgtgattag 29711180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 660 - 844
Target Start/End: Original strand, 45714977 - 45715160
Alignment:
Q  660 ggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatc 759  Q
    ||||||||||||||||  ||||||||||||| | ||  ||||||||| ||| |||||||||| ||||||||||| || ||||||| |||||||| |||||    
T  45714977 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcagtaatgaaactgagaaagagtgtgtaaaaagtgtggtgaaaattgaatc 45715076  T
Q  760 gtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattagag 844  Q
     |||||| | | |||||| |  |||| ||| |||| ||||||  |||| ||||||||||| |   |||| ||| |||||||||||    
T  45715077 ataccttgaaggtgaagctaagtcacccttgtataagcacgc-gtgagaataactgtctctgagatatgtggcgtgtgattagag 45715160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 726 - 841
Target Start/End: Original strand, 18772296 - 18772411
Alignment:
Q  726 aagagtgtatagaaagtgttgtgaaaatggaatcgtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggatt 825  Q
    |||||||| ||||||||||||||||||  ||   | ||||| ||| |||||||||||||| ||||||||| ||| | |||  ||||||||||||||||||    
T  18772296 aagagtgtgtagaaagtgttgtgaaaagtgacgtgcaccttgagggtgaagcaagttcacccttatatagacacacgttggtcataactgtctccggatt 18772395  T
Q  826 atgcggcatgtgatta 841  Q
    ||||||| ||||||||    
T  18772396 atgcggcgtgtgatta 18772411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 658 - 807
Target Start/End: Complemental strand, 12127774 - 12127625
Alignment:
Q  658 gcggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaa 757  Q
    ||||||| |||||||||  |||||||||||||| | ||  ||||||||| ||| ||||||||||||||| | |||| ||||||||||||||||||  |||    
T  12127774 gcggtgggacgaaaggtacctgcaggcacgttagcactccaacgctcaagtcagtaatgaaactaagaacgtgtgtgtagaaagtgttgtgaaaagtgaa 12127675  T
Q  758 tcgtaccttaaggatgaagcaagttcactcttatataggcacgctttgag 807  Q
    || ||| ||   | ||||||||  |||  |||||||| ||||||||||||    
T  12127674 tcatactttggtggtgaagcaatgtcaaccttatatatgcacgctttgag 12127625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 659 - 796
Target Start/End: Original strand, 20120328 - 20120465
Alignment:
Q  659 cggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaat 758  Q
    |||||||||||||||||||||||||||||||| | ||   || ||||| ||| |||||||||| ||||||||||| | ||||||| ||||| ||  ||||    
T  20120328 cggtggaacgaaaggtgtctgcaggcacgttagcactccgactctcaagtcagtaatgaaactgagaaagagtgtgtggaaagtggtgtgataagtgaat 20120427  T
Q  759 cgtaccttaaggatgaagcaagttcactcttatatagg 796  Q
    | |||||| ||| | || ||||| ||  ||||||||||    
T  20120428 cataccttgagggtaaaacaagtccatccttatatagg 20120465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 658 - 844
Target Start/End: Complemental strand, 10923276 - 10923090
Alignment:
Q  658 gcggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaa 757  Q
    ||||||||||||||||||| || |||||||||| | ||   || ||||| ||| | ||| |||| | ||||||||| ||||||||| ||||||||  |||    
T  10923276 gcggtggaacgaaaggtgtatgtaggcacgttatcactccgacactcaagtcagttatggaacttataaagagtgtgtagaaagtgctgtgaaaagtgaa 10923177  T
Q  758 tcgtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattagag 844  Q
      || |||| ||| |||||||||||||| ||||||||  |  |  |||  |||||| |||| ||| ||||||||| |||||||||||    
T  10923176 gtgtgccttgagggtgaagcaagttcacccttatatacacgtgtgttggtcataacagtcttcggcttatgcggcgtgtgattagag 10923090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 564 - 732
Target Start/End: Original strand, 30638449 - 30638617
Alignment:
Q  564 tgatttgtctagtgaggatggatgagtggcaaccgtggcggaaaatgctccggtgtgacggtgaaggcttctgatacagcggcgaagaatccttgcggtg 663  Q
    |||| |||| |||||| | |||||||||||||| || ||||| ||||| | ||||||||||| | |||||||| ||  | || |  || || | ||||||    
T  30638449 tgatatgtccagtgagaacggatgagtggcaacggttgcggataatgcactggtgtgacggtaatggcttctggtagggtggtgttgagtcatcgcggtg 30638548  T
Q  664 gaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtg 732  Q
    ||| ||||| ||||| ||| ||||||||| |||  |||||||  ||| ||||| |||||||||||||||    
T  30638549 gaaagaaagatgtctacagacacgttaacacttcgacgctcatgtcagtaatggaactaagaaagagtg 30638617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 564 - 830
Target Start/End: Complemental strand, 15390790 - 15390524
Alignment:
Q  564 tgatttgtctagtgaggatggatgagtggcaaccgtggcggaaaatgctccggtgtgacggtgaaggcttctgatacagcggcgaagaatccttgcggtg 663  Q
    |||| ||||| ||||| | || ||||||||||| ||| | || |||||||  |||||||||| | |||||| |  || || |||| || || | ||| ||    
T  15390790 tgatctgtctggtgagaacggttgagtggcaacggtgccagagaatgctctagtgtgacggtaacggcttccggcacggcagcgatgagtcttcgcgatg 15390691  T
Q  664 gaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtac 763  Q
    ||||||||| || ||   ||||||||| | |||| |||||||| | | | ||| |||||| ||| ||||| ||  ||||||||||||||  ||   ||||    
T  15390690 gaacgaaagctgcctattggcacgttagcactttgacgctcaagtaagtgatggaactaataaacagtgtgtaagaagtgttgtgaaaagtgatgtgtac 15390591  T
Q  764 cttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcg 830  Q
    ||| ||| |||||||||||||| ||||||||||| ||| | |  |||||| ||| |||| |||||||    
T  15390590 cttgagggtgaagcaagttcacccttatataggcgcgcgtaggccataaccgtccccgggttatgcg 15390524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 662 - 752
Target Start/End: Original strand, 18770296 - 18770388
Alignment:
Q  662 tggaacgaaaggtgtctgca--ggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaa 752  Q
    |||||||||||||| || ||  ||||||||| | || | |||||||| ||| |||||||| | ||||||||||| ||||||||||||||||||    
T  18770296 tggaacgaaaggtgcctacataggcacgttagcactctgacgctcaagtcagtaatgaaattgagaaagagtgtgtagaaagtgttgtgaaaa 18770388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 658 - 842
Target Start/End: Complemental strand, 19050546 - 19050362
Alignment:
Q  658 gcggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaa 757  Q
    ||||||||||||||||| | ||||| | ||||| | || | |||||||| ||| ||||  ||||||||||||| || ||  ||||||||||||||  ||     
T  19050546 gcggtggaacgaaaggtatttgcagacccgttagcactctgacgctcaagtcagtaatagaactaagaaagagagtgtaagaagtgttgtgaaaagtgat 19050447  T
Q  758 tcgtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattag 842  Q
      ||||| | ||  ||||| |||||||| |||||||||||  || |||  |||||||  |||||| ||||||||| | |||||||    
T  19050446 gtgtaccctgagagtgaagtaagttcacccttatataggcttgcgttggccataactaactccgggttatgcggcgtatgattag 19050362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 760 - 842
Target Start/End: Complemental strand, 24157315 - 24157233
Alignment:
Q  760 gtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattag 842  Q
    ||||||| ||| |||||||||||||| |||||||| || ||  |||  | ||||||||||||| |||||||| ||||||||||    
T  24157315 gtaccttgagggtgaagcaagttcacccttatataagcgcgtgttggccctaactgtctccgggttatgcggtatgtgattag 24157233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 559 - 617
Target Start/End: Original strand, 45714897 - 45714955
Alignment:
Q  559 gattttgatttgtctagtgaggatggatgagtggcaaccgtggcggaaaatgctccggt 617  Q
    |||| ||||||||| | |||||||||||||||||||||  ||||||||| |||||||||    
T  45714897 gattatgatttgtccaatgaggatggatgagtggcaacaatggcggaaagtgctccggt 45714955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 760 - 848
Target Start/End: Original strand, 19290549 - 19290637
Alignment:
Q  760 gtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattagaggcgg 848  Q
    ||||||||||| |||||||||||||| |||||||||   ||||| |  |||||| |||||||| |||||| || | |||||||| ||||    
T  19290549 gtaccttaagggtgaagcaagttcacccttatatagatgcgcttgggtcataaccgtctccgggttatgcagcgtatgattagaagcgg 19290637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 575 - 617
Target Start/End: Original strand, 12168891 - 12168933
Alignment:
Q  575 gtgaggatggatgagtggcaaccgtggcggaaaatgctccggt 617  Q
    |||| |||||||||| |||||| ||||||||||||||||||||    
T  12168891 gtgaagatggatgagaggcaacagtggcggaaaatgctccggt 12168933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 666 - 776
Target Start/End: Complemental strand, 27846622 - 27846512
Alignment:
Q  666 acgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtacct 765  Q
    |||||| ||| |||||||||||||| | ||  |||| |||| ||| ||||| |||| ||||| ||| | |||||||||||||| |||  |||| ||||||    
T  27846622 acgaaaagtgcctgcaggcacgttagcactccaacgatcaagtcagtaatggaactgagaaacagtttgtagaaagtgttgtgtaaagtgaattgtacct 27846523  T
Q  766 taaggatgaag 776  Q
    | ||| |||||    
T  27846522 tgagggtgaag 27846512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 583 - 822
Target Start/End: Original strand, 6203 - 6442
Alignment:
Q  583 ggatgagtggcaaccgtggcggaaaatgctccggtgtgacggtgaaggcttctgatacagcggcgaagaatccttgcggtggaacgaaaggtgtctgcag 682  Q
    |||||||||||||| ||| |||| ||||||| ||||||||||| | | |||  | ||| ||  ||  || ||  ||| ||||||| |||||||| |||||    
T  6203 ggatgagtggcaacggtgacggataatgctctggtgtgacggtaacgactttcggtacggcaacgttgagtctctgcagtggaacaaaaggtgtttgcag 6302  T
Q  683 gcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtaccttaaggatgaagcaagtt 782  Q
    |||||||| | |||  | |||||| ||| ||||| |||| ||||| ||||| ||||||||||||||||||  || ||||||||| ||  |||||||||||    
T  6303 gcacgttagcacttcgaagctcaagtcagtaatggaactgagaaatagtgtgtagaaagtgttgtgaaaagtgagtcgtaccttgagcgtgaagcaagtt 6402  T
Q  783 cactcttatataggcacgctttgagcataactgtctccgg 822  Q
    ||  ||||||||||| | | |||| |||||| ||||||||    
T  6403 catccttatataggcgcacgttgaacataaccgtctccgg 6442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 58; Significance: 6e-24; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 658 - 859
Target Start/End: Complemental strand, 95921 - 95720
Alignment:
Q  658 gcggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaa 757  Q
    ||||||| || ||||||  |||||||||||||| | ||| ||||||||| | | ||||| |||| ||||||||||  ||||||||||||||||||  |||    
T  95921 gcggtgggacaaaaggttcctgcaggcacgttaccacttcaacgctcaagttagtaatggaactgagaaagagtgcgtagaaagtgttgtgaaaagtgaa 95822  T
Q  758 tcgtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattagaggcggttataggac 857  Q
    || |||||| ||| ||||||||  |||| ||||||||||||||| ||  | ||| ||  |||||  || |||||| ||||||||| | |||||| |||||    
T  95821 tcataccttcagggtgaagcaacgtcacccttatataggcacgcgtttggaatatctacctccgagttttgcggcgtgtgattagggacggttagaggac 95722  T
Q  858 ac 859  Q
    ||    
T  95721 ac 95720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 56; Significance: 1e-22; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 698 - 860
Target Start/End: Complemental strand, 68871 - 68711
Alignment:
Q  698 aacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtaccttaaggatgaagcaagttcactcttatataggc 797  Q
    ||||||||| | | ||||| |||| |||||||||  |||||||||||||||||||  ||||| |||||| |||  |||||||| |||| |||||||||||    
T  68871 aacgctcaagttagtaatggaactgagaaagagt--atagaaagtgttgtgaaaagtgaatcataccttgagggagaagcaaggtcacccttatataggc 68774  T
Q  798 acgctttgagcataactgtctccggattatgcggcatgtgattagaggcggttataggacacg 860  Q
    |||| ||||| ||||||| ||| || ||  |||||||||||||||    ||||||||||||||    
T  68773 acgcgttgagaataactgcctctgggtttcgcggcatgtgattaggattggttataggacacg 68711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 4e-22; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 575 - 801
Target Start/End: Complemental strand, 9801277 - 9801052
Alignment:
Q  575 gtgaggatggatgagtggcaaccgtggcggaaaatgctccggtgtgacggtgaaggcttctgatacagcggcgaagaatccttgcggtggaacgaaaggt 674  Q
    |||||||||||||||  ||||| |||||||||||||||||| |||||| |  | | ||||   ||| | | |||| | || | || ||||||||||||||    
T  9801277 gtgaggatggatgagaagcaacagtggcggaaaatgctccgatgtgacagcaatgacttccagtacggtgacgaaaagtcttcgcagtggaacgaaaggt 9801178  T
Q  675 gtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtaccttaaggatga 774  Q
    | ||||| |||||||| | ||  ||| ||||| ||| ||||  |||  ||||||||||| ||||||||||||||||||  ||||| |||||| ||| |||    
T  9801177 gcctgcaagcacgttagcactc-aacactcaagtcagtaatagaacagagaaagagtgtgtagaaagtgttgtgaaaagtgaatcataccttgagggtga 9801079  T
Q  775 agcaagttcactcttatataggcacgc 801  Q
    |||||  |||| |||||||||||||||    
T  9801078 agcaatgtcacccttatataggcacgc 9801052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 658 - 842
Target Start/End: Complemental strand, 431427 - 431243
Alignment:
Q  658 gcggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaa 757  Q
    ||||||||| |||||||| || ||| ||||||| | |||  |||||||| ||||||||| |||| ||||||||||  | ||||||| ||||||||  |||    
T  431427 gcggtggaaagaaaggtgcctacagacacgttagcacttcgacgctcaagtcaataatggaactgagaaagagtgcgtggaaagtgctgtgaaaagtgaa 431328  T
Q  758 tcgtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattag 842  Q
    | || |||| ||| ||||||| || ||| ||||||||||| ||  |||  ||||||||||| ||| |||||| || |||||||||    
T  431327 ttgtcccttgagggtgaagcatgtccacccttatataggcgcgtgttgctcataactgtctgcgggttatgcagcgtgtgattag 431243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 698 - 825
Target Start/End: Complemental strand, 28723845 - 28723718
Alignment:
Q  698 aacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtaccttaaggatgaagcaagttcactcttatataggc 797  Q
    ||||||||| ||| ||||| |||||||||||||||| |||||| |||||||||||  |||||||| ||  ||| |||| |||  |||  |||||||||||    
T  28723845 aacgctcaagtcactaatggaactaagaaagagtgtgtagaaaatgttgtgaaaagtgaatcgtatctggagggtgaaacaatgtcatccttatataggc 28723746  T
Q  798 acgctttgagcataactgtctccggatt 825  Q
     ||||||||| ||||||||||| |||||    
T  28723745 gcgctttgagaataactgtctctggatt 28723718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 659 - 796
Target Start/End: Complemental strand, 21342397 - 21342260
Alignment:
Q  659 cggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaat 758  Q
    |||||| ||||||||| | |||||||||||||||  |  ||||||||| ||| ||||| |||| | ||||||||||||||||||||||||||||  ||||    
T  21342397 cggtgggacgaaaggtatatgcaggcacgttaacagtacaacgctcaagtcagtaatggaactgataaagagtgtatagaaagtgttgtgaaaagtgaat 21342298  T
Q  759 cgtaccttaaggatgaagcaagttcactcttatatagg 796  Q
    | ||| || ||| ||||| ||| | || ||||||||||    
T  21342297 catacattgagggtgaagtaaggttacccttatatagg 21342260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 723 - 858
Target Start/End: Original strand, 16704447 - 16704582
Alignment:
Q  723 agaaagagtgtatagaaagtgttgtgaaaatggaatcgtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccgg 822  Q
    |||||||| || ||||||||||||||||||  ||||| |||||| ||| |||||||||||||| ||||||||||| ||| |||   ||||| | ||||||    
T  16704447 agaaagagagtgtagaaagtgttgtgaaaagtgaatcataccttgagggtgaagcaagttcacccttatataggcgcgcgttggtgataaccgcctccgg 16704546  T
Q  823 attatgcggcatgtgattagaggcggttataggaca 858  Q
    ||| |||    ||||||||||| |||||| ||||||    
T  16704547 attttgctatgtgtgattagagacggttagaggaca 16704582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 583 - 842
Target Start/End: Original strand, 1770730 - 1770990
Alignment:
Q  583 ggatgagtggcaaccgtggcggaaaatgctccggtgtgacggtgaaggcttctgatacagcggcgaagaatccttgcggtggaacgaaaggtgtctgcag 682  Q
    |||||||||||||| |||| | | ||||||   |||||||||||| || || ||| || | |||   || || ||||||||||| ||||||||||||||     
T  1770730 ggatgagtggcaacggtggtgaataatgctttagtgtgacggtgatggtttttgaaacggaggcattgagtctttgcggtggaaggaaaggtgtctgcaa 1770829  T
Q  683 gcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtac--cttaaggatgaagcaag 780  Q
    ||| ||||   ||   |||||||| | | ||||| |||| || |||||||| ||||||||||||||||||  || || | |  ||| |||||||||||||    
T  1770830 gcatgttagtactccgacgctcaagttagtaatggaactgaggaagagtgtgtagaaagtgttgtgaaaagtga-tcatgcgccttgaggatgaagcaag 1770928  T
Q  781 ttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattag 842  Q
    ||| | ||||||||||  ||| ||| ||||||| ||||||| |||||||||| | |||||||    
T  1770929 ttcgcccttatataggtgcgcgttgtgcataaccgtctccgaattatgcggcgtatgattag 1770990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 698 - 859
Target Start/End: Original strand, 30606948 - 30607109
Alignment:
Q  698 aacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtaccttaaggatgaagcaagttcactcttatataggc 797  Q
    ||||||||| ||| ||||| || | ||||||||||  ||||||||||||||||||  ||||  |||||| ||| ||||| |||  ||| |||||||||||    
T  30606948 aacgctcaagtcagtaatggaattgagaaagagtgagtagaaagtgttgtgaaaagtgaattataccttgagggtgaagtaaggccacccttatataggc 30607047  T
Q  798 acgctttgagcataactgtctccggattatgcggcatgtgattagaggcggttataggacac 859  Q
     ||| || || |||||||||||||| ||  || || ||||||||| | |||||| |||||||    
T  30607048 gcgcgttaagaataactgtctccgggtttcgccgcgtgtgattagggacggttagaggacac 30607109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 760 - 842
Target Start/End: Original strand, 12108501 - 12108583
Alignment:
Q  760 gtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattag 842  Q
    ||||||| ||| |||||||||||||| ||||||||||||||| |||  |||||| | |||||| ||||||||| |||||||||    
T  12108501 gtaccttgagggtgaagcaagttcacccttatataggcacgcgttggtcataacggcctccgggttatgcggcttgtgattag 12108583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 760 - 842
Target Start/End: Original strand, 25496020 - 25496102
Alignment:
Q  760 gtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattag 842  Q
    ||||||||| | |||||||||||||| ||||||||||| | | |||| |||||| |||||||| ||||||||| |||||||||    
T  25496020 gtaccttaaaggtgaagcaagttcacccttatataggcgcacgttgatcataaccgtctccgggttatgcggcgtgtgattag 25496102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 665 - 843
Target Start/End: Original strand, 20622393 - 20622573
Alignment:
Q  665 aacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtataga--aagtgttgtgaaaatggaatcgta 762  Q
    ||||||||||  ||||||||| |||||| |||| |||||||| ||| |||||| |   ||||| ||||| ||||  ||||| ||||||||  ||||| ||    
T  20622393 aacgaaaggttcctgcaggcatgttaacactttgacgctcaagtcagtaatgagatagagaaatagtgtgtagataaagtggtgtgaaaagtgaatcata 20622492  T
Q  763 ccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattaga 843  Q
    |||| ||| |||||||||||||| |||||||| ||| |  ||| ||||||| ||||  || ||||| | | ||||||||||    
T  20622493 ccttgagggtgaagcaagttcacccttatatatgcatgtgttgggcataaccgtctttgggttatgtgacgtgtgattaga 20622573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 660 - 803
Target Start/End: Complemental strand, 14860208 - 14860065
Alignment:
Q  660 ggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatc 759  Q
    ||||||||||||||||  ||||||||| ||| | || | |  ||||||||| ||||| |||| ||||| ||| | ||  ||||||||||||||  ||       
T  14860208 ggtggaacgaaaggtgcttgcaggcacattagcactctgattctcaactcagtaatggaactgagaaacagtttgtaagaagtgttgtgaaaagtgatgt 14860109  T
Q  760 gtaccttaaggatgaagcaagttcactcttatataggcacgctt 803  Q
    ||||||| ||| |||||||||||||| ||||||||||| |||||    
T  14860108 gtaccttgagggtgaagcaagttcacccttatataggcgcgctt 14860065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 660 - 842
Target Start/End: Original strand, 12516167 - 12516349
Alignment:
Q  660 ggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatc 759  Q
    |||| ||||||||||| |||||| ||||||| | ||   |||||||| | | ||||| |||| ||||||| ||| ||  ||||||||||||||  ||       
T  12516167 ggtgaaacgaaaggtgcctgcagacacgttagcactccgacgctcaagttagtaatggaactgagaaagattgtgtaataagtgttgtgaaaagtgatat 12516266  T
Q  760 gtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattag 842  Q
    ||||||| ||| ||||||||||||||  |||||||||   || |||  |||||| |||||||  ||||||| |||||||||||    
T  12516267 gtaccttgagggtgaagcaagttcacctttatataggtgtgccttggccataaccgtctccgccttatgcgacatgtgattag 12516349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 561 - 779
Target Start/End: Complemental strand, 17485832 - 17485614
Alignment:
Q  561 ttttgatttgtctagtgaggatggatgagtggcaaccgtggcggaaaatgctccggtgtgacggtgaaggcttctgatacagcggcgaagaatccttgcg 660  Q
    ||||||| ||||  ||||| | |||||||||||||| | |||||| |||||||| |||||||||| |  |||| |||||| | |  |  || || | |||    
T  17485832 ttttgatctgtccggtgagaacggatgagtggcaacggcggcggataatgctccagtgtgacggtaacagcttatgatacggagctgttgagtcttcgcg 17485733  T
Q  661 gtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcg 760  Q
    |||||||||||||||||||  ||||| ||| | |   ||||||||| ||| ||||| || | |||| |||||| |||| | ||||||| |||  |||| |    
T  17485732 gtggaacgaaaggtgtctgtgggcacattagcaccccaacgctcaagtcagtaatggaattgagaaggagtgtgtagagaatgttgtgtaaaatgaatag 17485633  T
Q  761 taccttaaggatgaagcaa 779  Q
    |||||| ||| ||||||||    
T  17485632 taccttgagggtgaagcaa 17485614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 737 - 844
Target Start/End: Original strand, 13933003 - 13933113
Alignment:
Q  737 gaaagtgttgtgaaaatggaatcgtaccttaaggatgaag---caagttcactcttatataggcacgctttgagcataactgtctccggattatgcggca 833  Q
    |||| |||||||||||  ||||| ||||||| || |||||   ||||||||||||||||||| | ||| || | ||||||  |||| ||||||||||||     
T  13933003 gaaaatgttgtgaaaagtgaatcataccttaggggtgaagaagcaagttcactcttatatagacgcgcgttcaacataaccatctctggattatgcggcg 13933102  T
Q  834 tgtgattagag 844  Q
    |||||||||||    
T  13933103 tgtgattagag 13933113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 699 - 766
Target Start/End: Complemental strand, 17143819 - 17143752
Alignment:
Q  699 acgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtacctt 766  Q
    |||||||| ||| ||||| |||| ||||||||||| ||||||||||||||||||  ||||| ||||||    
T  17143819 acgctcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaatcatacctt 17143752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 614 - 840
Target Start/End: Complemental strand, 12731716 - 12731490
Alignment:
Q  614 cggtgtgacggtgaaggcttctgatacagcggcgaagaatccttgcggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaata 713  Q
    |||||||||||| |||||||| |  || |||||||||| || | | ||||||||||| |||| || ||  || ||||   ||   |||||||  ||| ||    
T  12731716 cggtgtgacggtaaaggcttccggcacggcggcgaagagtcttcgaggtggaacgaatggtgcctacaaccatgttagtactccgacgctcacgtcatta 12731617  T
Q  714 atgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataac 813  Q
    ||| |||| ||||||||||||||  ||||||||||||||  ||   | ||||| ||| |||||||||||||| |||||||| |   ||  ||  ||||||    
T  12731616 atggaactgagaaagagtgtataagaagtgttgtgaaaagtgatgtgaaccttgagggtgaagcaagttcacccttatatatgtgtgcgctggtcataac 12731517  T
Q  814 tgtctccggattatgcggcatgtgatt 840  Q
    ||||| ||| ||||||||| |||||||    
T  12731516 tgtcttcgggttatgcggcgtgtgatt 12731490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 698 - 752
Target Start/End: Complemental strand, 13085144 - 13085090
Alignment:
Q  698 aacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaa 752  Q
    ||||||||| |||||||||||||| ||||||| | | |||||||| |||||||||    
T  13085144 aacgctcaagtcaataatgaaactgagaaagaatatgtagaaagtattgtgaaaa 13085090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 714 - 839
Target Start/End: Complemental strand, 7835629 - 7835504
Alignment:
Q  714 atgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataac 813  Q
    |||||||| ||||| ||| | ||||||||||||||||||  ||  |||| ||| | |||||||||||||||  ||| |||||| || | |||  ||||||    
T  7835629 atgaaactgagaaatagtatgtagaaagtgttgtgaaaagtgatacgtatcttgatgatgaagcaagttcatccttttataggaacacgttgtccataac 7835530  T
Q  814 tgtctccggattatgcggcatgtgat 839  Q
     ||||| || ||||||| | ||||||    
T  7835529 cgtctctgggttatgcgacgtgtgat 7835504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 575 - 624
Target Start/End: Complemental strand, 17143943 - 17143894
Alignment:
Q  575 gtgaggatggatgagtggcaaccgtggcggaaaatgctccggtgtgacgg 624  Q
    ||||| ||||||||||| |||| |||||||| ||| ||||||||||||||    
T  17143943 gtgagaatggatgagtgtcaacggtggcggataattctccggtgtgacgg 17143894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 760 - 841
Target Start/End: Complemental strand, 20122788 - 20122707
Alignment:
Q  760 gtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgatta 841  Q
    ||||||| ||| ||||| |||||||| ||||||||||| |||||   | ||||| |||||||| ||||||||| | ||||||    
T  20122788 gtaccttgagggtgaagaaagttcacccttatataggcgcgcttatggaataaccgtctccgggttatgcggcgtatgatta 20122707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 586 - 797
Target Start/End: Original strand, 379624 - 379835
Alignment:
Q  586 tgagtggcaaccgtggcggaaaatgctccggtgtgacggtgaaggcttctgatacagcggcgaagaatccttgcggtggaacgaaaggtgtctgcaggca 685  Q
    ||||||||||| ||||| || |||||||||||||||| || |  ||||| | ||| ||| ||| || || | ||||||||||||||||||  |  |||||    
T  379624 tgagtggcaacagtggcagagaatgctccggtgtgactgtaacagcttccggtacggcgacgatgagtcttcgcggtggaacgaaaggtgcatctaggca 379723  T
Q  686 cgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtaccttaaggatgaagcaagttcac 785  Q
    ||||| | |||| || || || ||| ||||| |||| ||||||||||| ||  ||||||||||||||  ||   ||||||| ||| ||||||||||||||    
T  379724 cgttagcactttgacactgaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcac 379823  T
Q  786 tcttatataggc 797  Q
     | |||||||||    
T  379824 ccgtatataggc 379835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 712 - 805
Target Start/End: Complemental strand, 121068 - 120975
Alignment:
Q  712 taatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtaccttaaggatgaagcaagttcactcttatataggcacgctttg 805  Q
    ||||| |||| ||||||||||| || |||||||||||||||  ||   ||||||| ||| |||||||| ||||| ||||||||||| |||||||    
T  121068 taatggaactgagaaagagtgtgtataaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaaattcacccttatataggcgcgctttg 120975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 51; Significance: 9e-20; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 664 - 842
Target Start/End: Original strand, 215258 - 215436
Alignment:
Q  664 gaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtac 763  Q
    ||||||||| ||||||||||||||||| |  |  ||||||||| ||| |||||||||| | | ||||||| ||  ||||||||||||||  |    ||||    
T  215258 gaacgaaagttgtctgcaggcacgttagcaatccaacgctcaagtcagtaatgaaactgaaagagagtgtgtaagaagtgttgtgaaaagtgttgtgtac 215357  T
Q  764 cttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattag 842  Q
    ||| ||| |||||||||||||  ||||||||| |  |  |||| ||||||||||||||| ||||||||| |||||||||    
T  215358 cttgagggtgaagcaagttcatccttatatagccgtgtgttgatcataactgtctccgggttatgcggcgtgtgattag 215436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 642 - 818
Target Start/End: Complemental strand, 11042 - 10866
Alignment:
Q  642 gcggcgaagaatccttgcggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaag 741  Q
    ||||||| |||||  ||||||||||| |||||||| ||||||||||||| | ||  ||||||||| ||||||||| |||| | | ||||||| ||  |||    
T  11042 gcggcgatgaatctctgcggtggaacaaaaggtgtatgcaggcacgttagcactccaacgctcaagtcaataatggaactgaaagagagtgtgtaagaag 10943  T
Q  742 tgttgtgaaaatggaatcgtaccttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtct 818  Q
    |||||||||||  ||   ||||||| ||| |||| |||||||||  |||||||| | ||| |||| |||||| ||||    
T  10942 tgttgtgaaaagtgatgtgtaccttgagggtgaaacaagttcacctttatatagacgcgcattgatcataaccgtct 10866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 661 - 796
Target Start/End: Original strand, 22869 - 23004
Alignment:
Q  661 gtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcg 760  Q
    |||| |||||||||| |||| ||||||||| | || | |||||||| ||| ||||| |||| |||||  |||| ||  ||||||||||||||  ||   |    
T  22869 gtgggacgaaaggtgcctgcgggcacgttagcactctgacgctcaagtcagtaatggaactgagaaatcgtgtgtaagaagtgttgtgaaaagtgacgtg 22968  T
Q  761 taccttaaggatgaagcaagttcactcttatatagg 796  Q
    |||||| ||| |||||||||||||| ||||| ||||    
T  22969 taccttgagggtgaagcaagttcacccttatgtagg 23004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 701 - 796
Target Start/End: Original strand, 13945 - 14040
Alignment:
Q  701 gctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtaccttaaggatgaagcaagttcactcttatatagg 796  Q
    |||||| ||| |||||||||| ||||||||||| ||||||||||||||| ||  ||||| |||||| ||| ||||||||| |||| ||||||||||    
T  13945 gctcaagtcagtaatgaaactgagaaagagtgtgtagaaagtgttgtgagaagtgaatcataccttgagggtgaagcaagatcacccttatatagg 14040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 660 - 799
Target Start/End: Complemental strand, 4533 - 4394
Alignment:
Q  660 ggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatc 759  Q
    |||||||||||||||||||||| |||||||| | ||  ||||||||| ||| |||||||||| | | |||| || ||  ||||||| ||||||  ||       
T  4533 ggtggaacgaaaggtgtctgcaagcacgttagcactccaacgctcaagtcactaatgaaactgaaagagagagtgtaagaagtgttatgaaaaatgatgt 4434  T
Q  760 gtaccttaaggatgaagcaagttcactcttatataggcac 799  Q
    ||||||| ||| |||||||||||||| |||||||||||||    
T  4433 gtaccttgagggtgaagcaagttcacccttatataggcac 4394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 46; Significance: 9e-17; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 699 - 842
Target Start/End: Complemental strand, 313 - 169
Alignment:
Q  699 acgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaa-tg-gaatcgtaccttaaggatgaagcaagttcactcttatatagg 796  Q
    |||||||| ||| ||||| |||| ||||||||||| ||  |||||||||||||| || |||| ||||||| ||| |||||||||||||| ||||| ||||    
T  313 acgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgagaat-gtaccttgagggtgaagcaagttcacccttatctagg 215  T
Q  797 cacgctttgagcataactgtctccggattatgcggcatgtgattag 842  Q
    | ||| |||  ||||||||||||||| |||||| |  |||||||||    
T  214 cgcgcgttggtcataactgtctccgggttatgcagtgtgtgattag 169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 659 - 752
Target Start/End: Original strand, 7866 - 7959
Alignment:
Q  659 cggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaa 752  Q
    |||||||| ||||||||  || |||||||||| | || |||||||||| ||| ||||| || | ||||||||||| ||||||||||||||||||    
T  7866 cggtggaaggaaaggtgcatgtaggcacgttagcactctaacgctcaaatcagtaatgcaattgagaaagagtgtgtagaaagtgttgtgaaaa 7959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0543 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 768 - 848
Target Start/End: Complemental strand, 4949 - 4869
Alignment:
Q  768 aggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattagaggcgg 848  Q
    |||||||||||| ||||||||||||||||  |||||   |||||| ||||||||  |||||||||||||||||||| ||||    
T  4949 aggatgaagcaaattcactcttatataggttcgcttgtggcataattgtctccgatttatgcggcatgtgattagaagcgg 4869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0492 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 768 - 848
Target Start/End: Complemental strand, 6495 - 6415
Alignment:
Q  768 aggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgattagaggcgg 848  Q
    |||||||||||| ||||||||||||||||  |||||   |||||| ||||||||  |||||||||||||||||||| ||||    
T  6495 aggatgaagcaaattcactcttatataggttcgcttgtggcataattgtctccgatttatgcggcatgtgattagaagcgg 6415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 575 - 752
Target Start/End: Complemental strand, 29470 - 29295
Alignment:
Q  575 gtgaggatggatgagtggcaaccgtggcggaaaatgctccggtgtgacggtgaaggcttctgatacagcggcgaagaatccttgcggtggaacgaaaggt 674  Q
    ||||| ||||||| |||||||| || ||| ||| ||||||||| |||||||||  | ||||| |||  ||  || || || | |||||||||||||||||    
T  29470 gtgagaatggatgcgtggcaacggttgcgcaaagtgctccggtatgacggtgacagtttctggtacgacgatgatgagtcttcgcggtggaacgaaaggt 29371  T
Q  675 gtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaa 752  Q
    |  || || || |||| | ||  ||||||||| ||| |||||||| |||| |||||||||  ||||||||||||||||    
T  29370 gcatggagtcatgttagcactccaacgctcaagtcagtaatgaaaataaggaagagtgta--gaaagtgttgtgaaaa 29295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 664 - 841
Target Start/End: Original strand, 40782 - 40959
Alignment:
Q  664 gaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtac 763  Q
    |||||||||| |  ||||||||||||| | ||  ||||||||| ||| | ||| |||| | | |||| || ||| ||||||| ||||||  ||   ||||    
T  40782 gaacgaaaggcgcatgcaggcacgttagcactccaacgctcaagtcagtgatggaactgaaagagagagtgtaggaagtgttatgaaaagtgatgtgtac 40881  T
Q  764 cttaaggatgaagcaagttcactcttatataggcacgctttgagcataactgtctccggattatgcggcatgtgatta 841  Q
    ||| ||| |||||||||||||| ||| |||||||  ||  ||  |||||| |||||||| ||||||||||||||||||    
T  40882 cttgagggtgaagcaagttcacccttttataggcgtgcgctggtcataaccgtctccgggttatgcggcatgtgatta 40959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 699 - 842
Target Start/End: Complemental strand, 6930 - 6787
Alignment:
Q  699 acgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatggaatcgtaccttaaggatgaagcaagttcactcttatataggca 798  Q
    |||||||| ||| || ||||||| |||| |||||| ||  ||||||||||||||  ||   ||||||| ||| |||| ||||||||| ||| |||||||     
T  6930 acgctcaagtcagtattgaaactgagaacgagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaaacaagttcacccttgtataggcg 6831  T
Q  799 cgctttgagcataactgtctccggattatgcggcatgtgattag 842  Q
    | | |||  |||||| |||||| | ||||||||| |||||||||    
T  6830 cacgttggccataaccgtctccaggttatgcggcgtgtgattag 6787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 616 - 752
Target Start/End: Original strand, 11454 - 11587
Alignment:
Q  616 gtgtgacggtgaaggcttctgatacagcggcgaagaatccttgcggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataat 715  Q
    |||||||||| ||||||||||  || |||||||||| || |   ||||||||||| |||| || ||  || |||| | ||  |||||||| |||| ||||    
T  11454 gtgtgacggtaaaggcttctggcacggcggcgaagagtcttcaaggtggaacgaatggtgcctacaaccatgttagcactccaacgctcacctcattaat 11553  T
Q  716 gaaactaagaaagagtgtatagaaagtgttgtgaaaa 752  Q
    | |||| |||||||||||||   ||||||||||||||    
T  11554 ggaactgagaaagagtgtat---aagtgttgtgaaaa 11587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 583 - 752
Target Start/End: Original strand, 35158 - 35327
Alignment:
Q  583 ggatgagtggcaaccgtggcggaaaatgctccggtgtgacggtgaaggcttctgatacagcggcgaagaatccttgcggtggaacgaaaggtgtctgcag 682  Q
    ||||||| |||||| ||||  || || |||||||||||| ||| | |||||| | ||| ||||||  || || | |  ||| ||||||| |||  |||||    
T  35158 ggatgagaggcaacagtggtagataaagctccggtgtgatggtaacggcttccggtacggcggcgttgagtcttcgtagtgcaacgaaatgtgcttgcag 35257  T
Q  683 gcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaa 752  Q
    |||||||| | || | || ||||| ||| ||| | |||| ||||||||||| | ||||||||||||||||    
T  35258 gcacgttagcactctgacactcaagtcagtaacggaactgagaaagagtgtgtggaaagtgttgtgaaaa 35327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 785
Target Start/End: Complemental strand, 73915 - 73786
Alignment:
Q  656 ttgcggtggaacgaaaggtgtctgcaggcacgttaacgctttaacgctcaactcaataatgaaactaagaaagagtgtatagaaagtgttgtgaaaatgg 755  Q
    |||||||||||| |||||||  | |||||| |||| | || | |||||||| | | ||||| |  | | ||||||||  ||||||||||||||||||       
T  73915 ttgcggtggaacaaaaggtgcattcaggcatgttagcactctgacgctcaaattagtaatggatttgaaaaagagtgcgtagaaagtgttgtgaaaagta 73816  T
Q  756 aatcgtaccttaaggatgaagcaagttcac 785  Q
    |||| |||||| ||| ||||||||||||||    
T  73815 aatcataccttcagggtgaagcaagttcac 73786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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