View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_high_100 (Length: 214)
Name: NF12598_high_100
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_high_100 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 38933831 - 38934011
Alignment:
| Q |
15 |
catagggtgaatattttgccgtatttttgtgaaaggttgtgaagggaacggtggagtgggaggtttatgttgtggaggtttcctattatgggaagagata |
114 |
Q |
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| T |
38933831 |
catagggtgaatattttgccgtatttttgtgaaaggttgtgaagggaacggtggagtgggaggtttatgttgtggaggtttcctattatgggaagagata |
38933930 |
T |
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| Q |
115 |
ttgatggacctggtggaaggtttttgaaatttcttctttggagtaaaagtttcaaggttacaatgaaactaagggaaagga |
195 |
Q |
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| T |
38933931 |
ttgatggacctggtggaaggtttttgaactttcttctttggagtaaaagtttcaaggttacaatgaaactaagggaaagga |
38934011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 30 - 195
Target Start/End: Original strand, 12156014 - 12156179
Alignment:
| Q |
30 |
ttgccgtatttttgtgaaaggttgtgaagggaacggtggagtgggaggtttatgttgtggaggtttcctattatgggaagagatattgatggacctggtg |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||| |||||||| ||||||||||| ||||| |
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| T |
12156014 |
ttgccgtatttttgtgaaaggttgtgaagggaacggtggagtgggaggttgatgtagtggaggtgtcctattaagggaagagttattgatggacttggtg |
12156113 |
T |
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| Q |
130 |
gaaggtttttgaaatttcttctttggagtaaaagtttcaaggttacaatgaaactaagggaaagga |
195 |
Q |
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| T |
12156114 |
gaaggtttttaaactttcttctttgtagtaaaagtttcaaggtaaaaatgaaactaagggaaagga |
12156179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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