View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_high_20 (Length: 478)
Name: NF12598_high_20
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 18 - 468
Target Start/End: Original strand, 6134093 - 6134543
Alignment:
| Q |
18 |
attgtggaagatagtgaatgataggcttgcattgccacttttaatggatctttgtgataaagctggattgaatcttccaccatgttttatgagcctccca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6134093 |
attgtggaagatagtgaatgataggcttgcattgccacttttaatggatctttgtgataaagctggattgaatcttccaccatgttttatgagcctccca |
6134192 |
T |
|
| Q |
118 |
atggaacttaagctcttaatatttgagtatcttcctggtgatgatttggccaaagtgtgttgtacttgttcaaaattgcaataccttgcttctaatgatg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6134193 |
atggaacttaagctcttaatatttgagtatcttcctggtgatgatttggccaaagtgtgttgtacttgttcaaaattgcaataccttgcttctaatgatg |
6134292 |
T |
|
| Q |
218 |
agttatggaagaagaagtttgaggaggagtttggacaaagtgtgaatggtatgaggttttataaaagcttgtatgctcgttaccgcgcaacaaagaagaa |
317 |
Q |
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| T |
6134293 |
agttatggaagaagaagtttgaggaggagtttggacaaagtgtgaatggtatgaggttttataagagcttgtatgctcgttaccgcgcaacaaagaagaa |
6134392 |
T |
|
| Q |
318 |
ttcagatcaatcgttttcttttcgaattcctcggactcgtattttgagatactttcaaaggagaagaggtggtggttagtgtcatcttggaggatttgaa |
417 |
Q |
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| T |
6134393 |
ttcagatcaatcgttttcttttcgaattcctcggactcgtattttgagatactttcaaaggagaagaggtggtggttagtgtcatcttggaggatttgaa |
6134492 |
T |
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| Q |
418 |
tgaataattcgatgattccaagtgttgggaaagaatccttgttaacctttg |
468 |
Q |
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| T |
6134493 |
tgaataatccgatgattccaagtgttgggaatgaatccttgttaacctttg |
6134543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 18 - 468
Target Start/End: Original strand, 20600276 - 20600726
Alignment:
| Q |
18 |
attgtggaagatagtgaatgataggcttgcattgccacttttaatggatctttgtgataaagctggattgaatcttccaccatgttttatgagcctccca |
117 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
20600276 |
attgtggaagatagtgaacgataggcttgcatttccacttttaattgatctttgtgataaagctggattgattcttccaccttgttttatgagcctccca |
20600375 |
T |
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| Q |
118 |
atggaacttaagctcttaatatttgagtatcttcctggtgatgatttggccaaagtgtgttgtacttgttcaaaattgcaataccttgcttctaatgatg |
217 |
Q |
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| T |
20600376 |
atggaacttaagctcgtaatatttgagtatcttcctggtgatgatttggccaaagtctgttgtacttgttcaaagttgcaataccttgcctcaaatgatg |
20600475 |
T |
|
| Q |
218 |
agttatggaagaagaagtttgaggaggagtttggacaaagtgtgaatggtatgaggttttataaaagcttgtatgctcgttaccgcgcaacaaagaagaa |
317 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| | |||||||||||| |
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| T |
20600476 |
agttatggaagaaaaagtttgaggaggagtttggacaaagtgtgaatggtatgaggttttataagagcttgtatgctcaataccgggaaacaaagaagaa |
20600575 |
T |
|
| Q |
318 |
ttcagatcaatcgttttcttttcgaattcctcggactcgtattttgagatactttcaaaggagaagaggtggtggttagtgtcatcttggaggatttgaa |
417 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
20600576 |
ttcagagcaatcgttttcttttcgaattcctcggactcgtattttgagatactttcaaaggagaagaggtggtggttagtgtcatcttggaggatttaaa |
20600675 |
T |
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| Q |
418 |
tgaataattcgatgattccaagtgttgggaaagaatccttgttaacctttg |
468 |
Q |
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||||||| || |||||||||||||| |||| ||||||||||||||||||| |
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| T |
20600676 |
agaataatccggtgattccaagtgttaggaatgaatccttgttaacctttg |
20600726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 148; Significance: 6e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 47944611 - 47944312
Alignment:
| Q |
18 |
attgtggaagatagtgaatgataggcttgcattgccacttttaatggatctttgtgataaagctggattgaatcttccaccatgttttatgagcctccca |
117 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||| ||||| ||||||||||||||||||||||| | |||||||| ||||||||| | || || |
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| T |
47944611 |
attgtggaagatagtgaaagatgggcttgcattgccactattaattgatctttgtgataaagctggattagaacttccaccgtgttttatgcgtcttccg |
47944512 |
T |
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| Q |
118 |
atggaacttaagctcttaatatttgagtatcttcctggtgatgatttggccaaagtgtgttgtacttgttcaaaattgcaataccttgcttctaatgatg |
217 |
Q |
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| T |
47944511 |
atggagcttaagctgctgatatttgagtatcttcccggtgatgatttggccaaagtttgttgcacgtgttctgaattgcagtaccttgcctcgaatgatg |
47944412 |
T |
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| Q |
218 |
agttatggaagaagaagtttgaggaggagtttggacaaagtgtgaatggtatgaggttttataaaagcttgtatgctcgttaccgcgcaacaaagaagaa |
317 |
Q |
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| || |||||||||||||| |||||||||||||||||||| ||||||||||||| ||||| ||| | ||||| ||||| || || |||||||||||||| |
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| T |
47944411 |
acttgtggaagaagaagttcgaggaggagtttggacaaagggtgaatggtatgaagttttttaagaacttgtttgctcagtatcgggcaacaaagaagaa |
47944312 |
T |
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