View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_high_22 (Length: 457)
Name: NF12598_high_22
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 13 - 438
Target Start/End: Original strand, 43606673 - 43607096
Alignment:
| Q |
13 |
ttcactgaagctgacagtaaaattcaaacacatttccacacaatcaaacgacatctacctcttcacatgcaacactcaccctcttctttaaccaagtgtt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43606673 |
ttcactgaagctgacagtaaaattcaaacacatttccatacaatcaaacgacatctacctcttcacatgcaacactcaccctcttctttaaccaagtgtt |
43606772 |
T |
|
| Q |
113 |
cactcccatatccacgtgtcatcacctcctacctccttacttaaattaaattctaacatttttctcatcattatgtca-cnnnnnnnccctagtgaactg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
43606773 |
cactcccatatccacgtgtcatcacctcctacctccttacttaaattaaattctaacatttttctcatcattatgtcaccaaaaaaaccctagtgaactg |
43606872 |
T |
|
| Q |
212 |
aactgaactaaactaagagtctaagacatattcctaattcaatggctgaaactctcagggatgactactacggttaccacnnnnnnnnnnnnnnnnnnnn |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43606873 |
aactgaactaaactaagagtctaagacatattcctaattcaatggctgaaactctcagggatgactactacggttaccac---cagcagcagcagcagca |
43606969 |
T |
|
| Q |
312 |
naaccaacccataacattcacccaaacaagaacaaggaagggatttcatccttctacttcacaactcatagtacttgctactcttgtaccttttggagca |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43606970 |
gaaccaacccataacattcacccaaacaagaacaaggaagggatttcatccttctacttcacaactcatagtacttgctactcttgtaccttttggagca |
43607069 |
T |
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| Q |
412 |
actcttctcattcttgctggtctcaca |
438 |
Q |
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||||||||||||||||||||||||||| |
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| T |
43607070 |
actcttctcattcttgctggtctcaca |
43607096 |
T |
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