View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12598_high_3 (Length: 692)
Name: NF12598_high_3
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_high_3 |
 | |
|
| [»] scaffold0023 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 377; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 292 - 676
Target Start/End: Original strand, 16455834 - 16456217
Alignment:
| Q |
292 |
actgttggagatgtatataaaatgtggaataaaacagtaacaatatcaatgaaatagtgaagaaaaagattgtaattgtattaatggtgatgaacaatta |
391 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16455834 |
actgttggagatgtatataaaatgtg-aataaaacagtaacaatatcaatgaaatagtgaagaaaaagattgtaattgtattaatggtgatgaacaatta |
16455932 |
T |
|
| Q |
392 |
caagagaaataaggagtaacaaactgatagtgagatactatcagtccctgatagcacgcagtgctcccaaatcactaacaaagtgaccccacagaataac |
491 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16455933 |
caagagaaataaggagtaacaaactgatagtgagatactatcagtccctgatagcacgcagtgctcccaaatcactaacaaagtgaccccacagaataac |
16456032 |
T |
|
| Q |
492 |
agaatacttagctacctattctctgacttactattacttatatagctactaaaactcatgcatcccatacaccaacactgccacctcatcattccttccc |
591 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16456033 |
agaatacttagctacctattctctgacttactattacttatatagctactaaaactcatgcatcccatacaccaacactgccacctcatcattccttccc |
16456132 |
T |
|
| Q |
592 |
ttttcctcttttcctagtataaactctccatatcttaggtttgggcccatagtcacagcccatttcctcattcacattcctatca |
676 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16456133 |
ttttcctcttttcctagtataaactctccatatcttaggtttgggcccatagtcacagcccatttcctcattcacattcctatca |
16456217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 21 - 143
Target Start/End: Complemental strand, 33821377 - 33821255
Alignment:
| Q |
21 |
taccgtgtgcaatgtggtcggacaatttatggaacctgggggagcaagtaggcaatgacagaatttgctcatactcttcattacaagaagatatcaactt |
120 |
Q |
| |
|
|||| |||| |||||||||||||| |||||||||| ||||||| |||||| || ||||| |||| |||||| |||||| ||||||||||| | |||||| |
|
|
| T |
33821377 |
taccatgtggaatgtggtcggacagtttatggaacttgggggaacaagtaaacattgacaaaattggctcatgctcttcgttacaagaagagaacaactt |
33821278 |
T |
|
| Q |
121 |
caatatggagtttccaaatgttg |
143 |
Q |
| |
|
||||||||| |||||||||||| |
|
|
| T |
33821277 |
taatatggaggttccaaatgttg |
33821255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 33733900 - 33733813
Alignment:
| Q |
21 |
taccgtgtgcaatgtggtcggacaatttatggaacctgggggagcaagtaggcaatgacagaatttgctcatactcttcattacaaga |
108 |
Q |
| |
|
||||||||||| ||| |||||||||||||||| || |||| || |||||||||| ||| |||| ||||| ||||||| ||||||| |
|
|
| T |
33733900 |
taccgtgtgcattgtcgtcggacaatttatgggacttgggtgaacaagtaggcagtgagcaaattggctcaggctcttcaatacaaga |
33733813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 33762458 - 33762371
Alignment:
| Q |
21 |
taccgtgtgcaatgtggtcggacaatttatggaacctgggggagcaagtaggcaatgacagaatttgctcatactcttcattacaaga |
108 |
Q |
| |
|
|||| |||||||||| | | || ||||| |||||| ||||||||| ||||| || ||| | |||| |||||| ||||||||||||||| |
|
|
| T |
33762458 |
taccatgtgcaatgttgaccgataatttgtggaacttgggggagccagtagacagtgagaaaattggctcatgctcttcattacaaga |
33762371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 294
Target Start/End: Original strand, 114555 - 114830
Alignment:
| Q |
19 |
cttaccgtgtgcaatgtggtcggacaatttatggaacctgggggagcaagtaggcaatgacagaatttgctcatactcttcattacaagaagatatcaac |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
114555 |
cttaccgtgtgcaatgtggtcggacaatttatggaacctgggggagcaagtaggcaatgacagaatttgctcatactcttcattacaagaagatatcaac |
114654 |
T |
|
| Q |
119 |
ttcaatatggagtttccaaatgttggtaactatttctgggattccaatcttcgtgattatgattcttcttgtgatcattagatcgttgtgtagttctatg |
218 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
114655 |
ttcaatacggagtttccaaatgttggtaactatttctcggattccaatcttcgtgattatgattcttcttgggatcattagatcgttgtgtagttctatg |
114754 |
T |
|
| Q |
219 |
ttgaaactcaacacaagaaggtcttttattattaatatttacttttcaataaaacttaatttaatgtgttgtaact |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
114755 |
ttgaaactcaacacaagaaggtcttttattattaatatttacttttcaataaaacttaatttaatgtgttgtaact |
114830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 297 - 676
Target Start/End: Original strand, 620831 - 621217
Alignment:
| Q |
297 |
tggagatgtatataaaatgtggaataaaacagtaacaatatcaatgaaatagtgaagaaaaagattgtaattgtattaatggtgatgaacaattacaaga |
396 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||| | |||| || | || |||| | |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
620831 |
tggagatgtatatgaaattgtgaataaaacagtaacaattttaatgtaaaaatggtgaaa--gcttgtaattgtatcaatggtgatgaacaattacaaga |
620928 |
T |
|
| Q |
397 |
gaaataagga--------gtaacaaactgatagtgagatactatcagtccctgatagcacgcagtgctcccaaatcactaacaaagtgaccccacagaat |
488 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
620929 |
gaaataagggacaaaagcgtaacaaactgatagtgagatactatcaatccctcatagcacgcagtgctcccaaatcactaacaaagagaccccacagaat |
621028 |
T |
|
| Q |
489 |
aacagaatacttagctacct-attctctgacttactattacttatatagctactaaaactcatgcatcccatacaccaacactgccacctcatcattcct |
587 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||| ||| |||| | |||| ||||||||||||||| |
|
|
| T |
621029 |
aacagaatacttagctaccttattctctgacttactattacttatatagttaacaaaactcatgcatcacatgcaccgaaactgacacctcatcattcct |
621128 |
T |
|
| Q |
588 |
tcccttttcctcttttcctagtataaactctccatatcttaggtttgggcccatagtcacagcccatttcctcattcacattcctatca |
676 |
Q |
| |
|
| |||||||||||||||||||| || ||||||||||||||||||||||| ||||||||| || |||||| ||||||||||||||||| |
|
|
| T |
621129 |
ttccttttcctcttttcctagtgtagactctccatatcttaggtttgggtccatagtcaaggcaaatttccacattcacattcctatca |
621217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University