View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_high_34 (Length: 406)
Name: NF12598_high_34
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_high_34 |
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Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 11 - 388
Target Start/End: Original strand, 41645790 - 41646167
Alignment:
| Q |
11 |
cacagaatgagagaattgtcccaaaaatatggccctctcatgcacctacaacttggagagacttcagtcatagtggtctcttccaaagaaattgcccaag |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41645790 |
cacagaatgagagaattgtcccaaaaatatggccctctcatgcacctacaacttggagagacttcagtcatagtggtctcttccaaagaaattgcccaag |
41645889 |
T |
|
| Q |
111 |
aggtgttgaaaacaaatgaagtcatatttccacaaagacctcgttctcttggtctagaaattgtttcttatggttgcactgacattgccttttcacccta |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41645890 |
aggtgttgaaaacaaatgaagtcatatttccacaaagacctcgttctcttggtctagaaattgtttcttatggttgcactgacattgccttttcacccta |
41645989 |
T |
|
| Q |
211 |
tggagagtattggaggcaggtacgaaaaatatgcacattggagctgttgagtgttaaacgtgtgagatcattccaatcaattcgagaggaagaggtatca |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41645990 |
tggagagtattggaggcaggtacgaaaaatatgcacattggagctgttgagtgttaaacgtgtgagatcattccaatcaattcgagaggaagaggtatca |
41646089 |
T |
|
| Q |
311 |
aaattaattagatatctttctataaacaaggggtctacaatcaacttcacggatgaaattttagctatgacatataac |
388 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
41646090 |
aaattaattagatatctttctataaacaaggggtctacaatcaacttcacagatgaaattttagctatgacatataac |
41646167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 11 - 386
Target Start/End: Original strand, 41652992 - 41653367
Alignment:
| Q |
11 |
cacagaatgagagaattgtcccaaaaatatggccctctcatgcacctacaacttggagagacttcagtcatagtggtctcttccaaagaaattgcccaag |
110 |
Q |
| |
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||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||| ||| |
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| T |
41652992 |
cacagcatgagagaattgtcccaaaaatatggtcctctcatgcacctaaaacttggagagacttcagccatagtggtctcttcaaaagaaattgccaaag |
41653091 |
T |
|
| Q |
111 |
aggtgttgaaaacaaatgaagtcatatttccacaaagacctcgttctcttggtctagaaattgtttcttatggttgcactgacattgccttttcacccta |
210 |
Q |
| |
|
|||||||||||||||||||| ||| |||||| |||||||| || ||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
41653092 |
aggtgttgaaaacaaatgaaatcacatttccgcaaagaccacgctctcttggtttagaaattgtttcttatggttgcactgacattgctttttcccccta |
41653191 |
T |
|
| Q |
211 |
tggagagtattggaggcaggtacgaaaaatatgcacattggagctgttgagtgttaaacgtgtgagatcattccaatcaattcgagaggaagaggtatca |
310 |
Q |
| |
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||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
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| T |
41653192 |
tggagagtattggaggcagctacgcaaaatatgcacattggagctgttgagtgttaaacgtgtgagatcataccaatcaattcgagaggaagaggtgtcg |
41653291 |
T |
|
| Q |
311 |
aaattaattagatatctttctataaacaaggggtctacaatcaacttcacggatgaaattttagctatgacatata |
386 |
Q |
| |
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||||||||||||||| ||||||| |||| || ||||| |||||| | || |||||||||||| || ||||||||| |
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|
| T |
41653292 |
aaattaattagatatatttctattaacactggatctaccatcaaccttacagatgaaattttatctttgacatata |
41653367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 14 - 388
Target Start/End: Complemental strand, 41624012 - 41623639
Alignment:
| Q |
14 |
agaatgagagaattgtcccaaaaatatggccctctcatgcacctacaacttggagagacttcagtcatagtggtctcttccaaagaaattgcccaagagg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||| |||||||||||| ||| || |
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| T |
41624012 |
agaatgagagaattgtcccaaaaatatggccctctcatgcacctaaaacttggagaaacttcaactatagtggtctcttctaaagaaattgccaaagtgg |
41623913 |
T |
|
| Q |
114 |
tgttgaaaacaaatgaagtcatatttccacaaagacctcgttctcttggtctagaaattgtttcttatggttgcactgacattgccttttcaccctatgg |
213 |
Q |
| |
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|| ||||||||||||| | || |||| ||||||| ||||| ||||||| ||||||| | | |||||| ||||| |||| ||||||||| ||| |
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| T |
41623912 |
tgatgaaaacaaatgatggcacatttggtcaaagac-tcgttttcttggtgcagaaattatagcctatggtagcactagcattttcttttcacctgctgg |
41623814 |
T |
|
| Q |
214 |
agagtattggaggcaggtacgaaaaatatgcacattggagctgttgagtgttaaacgtgtgagatcattccaatcaattcgagaggaagaggtatcaaaa |
313 |
Q |
| |
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||| ||||||||| | || ||||||||||||||||||| ||||||||| |||||||| || |||||||||||||||||||||||||||| | |||||| |
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| T |
41623813 |
agactattggaggaatataaaaaaaatatgcacattggagttgttgagtgctaaacgtgcgaaatcattccaatcaattcgagaggaagagttgtcaaaa |
41623714 |
T |
|
| Q |
314 |
ttaattagatatctttctataaacaaggggtctacaatcaacttcacggatgaaattttagctatgacatataac |
388 |
Q |
| |
|
|||||||||||| |||||||||||| || ||||| |||||| | || |||||||| | | |||||||||||||| |
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|
| T |
41623713 |
ttaattagatatatttctataaacactggatctactatcaaccttacagatgaaatatcatctatgacatataac |
41623639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 266 - 318
Target Start/End: Original strand, 41463649 - 41463701
Alignment:
| Q |
266 |
aaacgtgtgagatcattccaatcaattcgagaggaagaggtatcaaaattaat |
318 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||||| ||||| |
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|
| T |
41463649 |
aaacgtgtgagatcattccaatcaattagagaagaagaggtatcaaatttaat |
41463701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 14 - 388
Target Start/End: Original strand, 2431813 - 2432187
Alignment:
| Q |
14 |
agaatgagagaattgtcccaaaaatatggccctctcatgcacctacaacttggagagacttcagtcatagtggtctcttccaaagaaattgcccaagagg |
113 |
Q |
| |
|
||||||||||||||||||| ||| ||||| ||| |||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||| ||||| |
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|
| T |
2431813 |
agaatgagagaattgtccctaaagtatggtcctatcatgcacctacaacttggagagacttcagccatagtggtttcttctaaagaaattgccaaagagt |
2431912 |
T |
|
| Q |
114 |
tgttgaaaacaaatgaagtcatatttccacaaagacctcgttctcttggtctagaaattgtttcttatggttgcactgacattgccttttcaccctatgg |
213 |
Q |
| |
|
|||| ||||| ||||| || | |||| | ||||||||||||| ||||||| |||||||||||||||||| |||| |||||| |||| || ||||||| |
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|
| T |
2431913 |
tgttcaaaaccaatgatgttacattttctcaaagacctcgttttcttggtgctgaaattgtttcttatggtagcaccaacattgtctttgcatcctatgg |
2432012 |
T |
|
| Q |
214 |
agagtattggaggcaggtacgaaaaatatgcacattggagctgttgagtgttaaacgtgtgagatcattccaatcaattcgagaggaagaggtatcaaaa |
313 |
Q |
| |
|
||| |||||||||||| || |||||||||||||||| || |||||||||| |||||||||||||||||||||||||||| ||||||||||||| | ||| |
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|
| T |
2432013 |
agattattggaggcagctaagaaaaatatgcacattagaactgttgagtgctaaacgtgtgagatcattccaatcaattagagaggaagaggtgttaaat |
2432112 |
T |
|
| Q |
314 |
ttaattagatatctttctataaacaaggggtctacaatcaacttcacggatgaaattttagctatgacatataac |
388 |
Q |
| |
|
|||| |||| | |||||||||||| || ||| |||||| |||| ||||||||||| ||||| ||||||| |
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|
| T |
2432113 |
ttaacaagatgtatttctataaacactggaactattatcaacctcactcatgaaattttatctatgcaatataac |
2432187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 111; Significance: 7e-56; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 18 - 388
Target Start/End: Complemental strand, 12439669 - 12439299
Alignment:
| Q |
18 |
tgagagaattgtcccaaaaatatggccctctcatgcacctacaacttggagagacttcagtcatagtggtctcttccaaagaaattgcccaagaggtgtt |
117 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||||||| || |||||| |||||| | ||||| ||||||||||| ||||||||| | |
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|
| T |
12439669 |
tgagagaattgtccaaaaaatatggccctatcatgcacctacaacttggtgaaacttcaaccatagttatttcttctaaagaaattgcacaagaggtgct |
12439570 |
T |
|
| Q |
118 |
gaaaacaaatgaagtcatatttccacaaagacctcgttctcttggtctagaaattgtttcttatggttgcactgacattgccttttcaccctatggagag |
217 |
Q |
| |
|
||||| ||||| ||| |||| | |||||| ||| | | ||||| ||||||||| ||||||||||||| || ||| ||||||||||||||||| |
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|
| T |
12439569 |
caaaaccaatgatctcaaatttgctcaaagatatcgctttattggtgcagaaattgtaacttatggttgcaccaaccttgtgttttcaccctatggagac |
12439470 |
T |
|
| Q |
218 |
tattggaggcaggtacgaaaaatatgcacattggagctgttgagtgttaaacgtgtgagatcattccaatcaattcgagaggaagaggtatcaaaattaa |
317 |
Q |
| |
|
||||||| | || || ||||||| ||||||||||||||||||||| || |||||||||||||||||||||||| | |||||||||| ||||| || | |
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|
| T |
12439469 |
tattggaaggagctaagaaaaatctgcacattggagctgttgagtacgaaccgtgtgagatcattccaatcaattaggaaggaagaggtgtcaaatttta |
12439370 |
T |
|
| Q |
318 |
ttagatatctttctataaacaaggggtctacaatcaacttcacggatgaaattttagctatgacatataac |
388 |
Q |
| |
|
||| | || ||||| ||||| || |||| ||||||| ||| ||||||||||| || || |||||||| |
|
|
| T |
12439369 |
ttaaaaatatttcttcaaacactggatctaaaatcaacctcagtcatgaaattttatctttgtcatataac |
12439299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 194 - 247
Target Start/End: Complemental strand, 12638184 - 12638131
Alignment:
| Q |
194 |
attgccttttcaccctatggagagtattggaggcaggtacgaaaaatatgcaca |
247 |
Q |
| |
|
||||| |||||||| |||||| | |||||||||||| ||||||||||||||||| |
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|
| T |
12638184 |
attgcattttcaccttatggaaattattggaggcagctacgaaaaatatgcaca |
12638131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 12611184 - 12611123
Alignment:
| Q |
194 |
attgccttttcaccctatggagagtattggaggcaggtacgaaaaatatgcacattggagct |
255 |
Q |
| |
|
||||| |||||||| |||||| | |||||||| || ||||||||||||||||| ||||||| |
|
|
| T |
12611184 |
attgctttttcaccttatggaaattattggagacaactacgaaaaatatgcacaatggagct |
12611123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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