View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_high_41 (Length: 374)
Name: NF12598_high_41
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_high_41 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 358
Target Start/End: Complemental strand, 16819386 - 16819053
Alignment:
| Q |
20 |
agggtgtgaaaagtgtagaccttcaatttggtttgaacttgtatcgta------tattatagcagaaactatgtattgtggttcaagttggtctatggat |
113 |
Q |
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| T |
16819386 |
agggtgtgaaaagtgtagaccttcaatttggtttgaacttgtatagtagtagtatattatagcagaaactatgtattgtggttcaagttggtctatggat |
16819287 |
T |
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| Q |
114 |
caaagtgtttggtcatctaaattgtaaccccatattggtcaattttattgctttccaaaccaggtgattttgtagtttcaataatatggaaaactgatta |
213 |
Q |
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| T |
16819286 |
caaagtgtttggtcatctaaattgtaaccccatattggtcaattttatggctttccaaaccaggtgattttggagtttcaataatatggaaaactgatta |
16819187 |
T |
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| Q |
214 |
catgtgataatcctcctgtggtacttgactgtttggtggtgctgagttttggtagaagggaa---cttcatgatttcaatannnnnnnnnnnnnnnnnnn |
310 |
Q |
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| T |
16819186 |
catgtgataatcctc-------------ctgtttggtggtgctgagttttggtagaagggaacttcttcatgatttcaata-ttttttttcttttcactt |
16819101 |
T |
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| Q |
311 |
ncgttcatgaattaggattcagaaatacaattattgtttctaaatgat |
358 |
Q |
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| T |
16819100 |
tcgttcatgaattaggattcagaaatacaattattgtttctaaatgat |
16819053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 163 - 247
Target Start/End: Complemental strand, 33877755 - 33877671
Alignment:
| Q |
163 |
gctttccaaaccaggtgattttgtagtttcaataatatggaaaactgattacatgtgataatcctcctgtggtacttgactgttt |
247 |
Q |
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| T |
33877755 |
gctttccaaaccaggtggttttggagcttcaagaagatggaaaactgactacatgcgatgatcctcctgtggtatttggctgttt |
33877671 |
T |
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