View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_high_42 (Length: 370)
Name: NF12598_high_42
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_high_42 |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 16 - 359
Target Start/End: Complemental strand, 446907 - 446564
Alignment:
| Q |
16 |
cctccaacagtacttcccaaaagaattagacatccaagaaaccagttgttctcatcacttgtcgaggttgtggccatgattgattttgaagatatatttt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
446907 |
cctccaacagtacttcccaaaagaattagacatccaagaaaccagttgttctcatcacttgtcgaggttgtggccatgattgattttgaagatatatttt |
446808 |
T |
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| Q |
116 |
ctgcatttaaaagttttggacccttcaacaatgcgatggacattgctccacaaacacatattattgttcccactattttggctatagttctcatacttcg |
215 |
Q |
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| T |
446807 |
ctgcatttaaaagttttggaccctttaacaatgcgatggacattgctccacaaacacatattattgttcccactattttggctatagttctcatacttcg |
446708 |
T |
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| Q |
216 |
aatattgaatttctccattctgtaatataatcaatttcatattaattaatttgatggggcaacaaaaataggttgagtgtagttagaaatttaccctgca |
315 |
Q |
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| T |
446707 |
aatattgaatttctccattctgtaatataatcaatttcatattaattaatttgatggggcaacaaaaataggttgagtgtagttagaaatttaccctgca |
446608 |
T |
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| Q |
316 |
aaggctgctattacaaatgtgattgctggaataagattgttcat |
359 |
Q |
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| T |
446607 |
aaggctgctattacaaatgtgattgctggaataagattgttcat |
446564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 80 - 254
Target Start/End: Complemental strand, 467853 - 467679
Alignment:
| Q |
80 |
aggttgtggccatgattgattttgaagatatattttctgcatttaaaagttttggacccttcaacaatgcgatggacattgctccacaaacacatattat |
179 |
Q |
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| T |
467853 |
aggttgtggccatgattgattttgaaagtatcttatctgcatttagtagttttggacccttcaacaatgcaattgacactgctccacttacacatataat |
467754 |
T |
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| Q |
180 |
tgttcccactattttggctatagttctcatacttcgaatattgaatttctccattctgtaatataatcaatttca |
254 |
Q |
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| T |
467753 |
tgtccccactattttggctatagttcttatacttcgaatattcactttttccattctgtaatataatcaatttca |
467679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 79 - 244
Target Start/End: Complemental strand, 474891 - 474723
Alignment:
| Q |
79 |
gaggttgtggccatgattgattttgaagata---tattttctgcatttaaaagttttggacccttcaacaatgcgatggacattgctccacaaacacata |
175 |
Q |
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|||||| |||||||||| ||||||| || || | ||||||||||||| || |||||||||||||||||||| || |||| ||||||||||||||||| |
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| T |
474891 |
gaggttatggccatgatagattttgtaggtagtatgttttctgcatttagtagctttggacccttcaacaatgctatagacaatgctccacaaacacata |
474792 |
T |
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| Q |
176 |
ttattgttcccactattttggctatagttctcatacttcgaatattgaatttctccattctgtaatata |
244 |
Q |
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| T |
474791 |
ttaatgtccctactattttggctatagttctcaaacttcgaatgttgactttctccattctgtaatata |
474723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 88 - 246
Target Start/End: Complemental strand, 480229 - 480068
Alignment:
| Q |
88 |
gccatgattgattttgaagatatattttctgcatttaaaagt---tttggacccttcaacaatgcgatggacattgctccacaaacacatattattgttc |
184 |
Q |
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||||||||||| ||||||| ||| || |||||||||| ||| |||||||||||||||||||| || || | |||||||| | |||||| | ||| | |
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| T |
480229 |
gccatgattgactttgaagttatgttctctgcatttattagtagctttggacccttcaacaatgcaatagatactgctccacttatacatatcactgtcc |
480130 |
T |
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| Q |
185 |
ccactattttggctatagttctcatacttcgaatattgaatttctccattctgtaatataat |
246 |
Q |
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| T |
480129 |
ccactattttggctatagttctcatacttcgaatatttactttctccattctgtaatataat |
480068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 115 - 250
Target Start/End: Complemental strand, 455540 - 455399
Alignment:
| Q |
115 |
tctgcatttaaaagttttggacccttcaacaatgcgatggacattg------ctccacaaacacatattattgttcccactattttggctatagttctca |
208 |
Q |
| |
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|||||||||| ||||||||||||||||| |||| ||||||| || ||||| ||||||||| ||||| || |||||||||||||||||||||| |
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| T |
455540 |
tctgcatttagtagttttggacccttcaataatgtcatggacagtgacactgctccagtaacacatatcattgtcccaactattttggctatagttctca |
455441 |
T |
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| Q |
209 |
tacttcgaatattgaatttctccattctgtaatataatcaat |
250 |
Q |
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|||| ||||||| | |||||||||||||||||||| ||||| |
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| T |
455440 |
aactttgaatattcactttctccattctgtaatatattcaat |
455399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 346
Target Start/End: Complemental strand, 479987 - 479947
Alignment:
| Q |
306 |
ttaccctgcaaaggctgctattacaaatgtgattgctggaa |
346 |
Q |
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||||||| |||||||||||||||||||||||| |||||||| |
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| T |
479987 |
ttaccctacaaaggctgctattacaaatgtgactgctggaa |
479947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 80 - 240
Target Start/End: Original strand, 27491487 - 27491647
Alignment:
| Q |
80 |
aggttgtggccatgattgattttgaagatatattttctgcatttaaaagttttggacccttcaacaatgcgatggacattgctccacaaacacatattat |
179 |
Q |
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|||||||| | |||||||||||||||| ||| |||||||||||| || |||||||||||||| | ||| ||| ||| |||||||| |||| ||| || |
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| T |
27491487 |
aggttgtgccaatgattgattttgaagttatgctttctgcatttagcagctttggacccttcaatagtgcaatgaacactgctccacttacacctataat |
27491586 |
T |
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| Q |
180 |
tgttcccactattttggctatagttctcatacttcgaatattgaatttctccattctgtaa |
240 |
Q |
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|||||| | |||||||||||||||||||| ||||| |||||| | || ||||||||||||| |
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| T |
27491587 |
tgttcctattattttggctatagttctcaaacttctaatattcacttgctccattctgtaa |
27491647 |
T |
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