View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_high_44 (Length: 364)
Name: NF12598_high_44
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_high_44 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 354
Target Start/End: Original strand, 6153757 - 6154093
Alignment:
| Q |
18 |
ccttgctctgttcagcaacacacccttcctctccaacattacgccttcaccgtcgcattatatgaccttcaccagcttccgtcgactgctacaccacaac |
117 |
Q |
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| T |
6153757 |
ccttgctctgttcagcaacatacccttcctctccaacattacgccttcaccgtcgcattatatgaccttcaccagcttccgtcgactgctacaccacaac |
6153856 |
T |
|
| Q |
118 |
tttagactttgccgccaccgtctattctgtttgtttactacttaaaacttcaaaatttaatctcaatctctttcaatacacgtgttatatttcttttgca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
6153857 |
tttagactttgccgccaccgtctattctgtttgtttactacttaaaacttcaaaatttaatctcaatctgtttcaatacaggtgttatatttcttttgca |
6153956 |
T |
|
| Q |
218 |
tttgtgtacatggattattaatattaatattaaatctcataatcttctgatttttgggttaaactattaataaatcataactaaattatgttggtatagg |
317 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6153957 |
tttgtgtacatggattattaatattaatcttaaatctcataatcttctgatttttgggttaaactattaataaatcataattaaattatgttggtatagg |
6154056 |
T |
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| Q |
318 |
ttaaccttgagatcatgggcggatctagacatttcat |
354 |
Q |
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| T |
6154057 |
ttaaccttgagatcatgggtggatctagacatttcat |
6154093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 274
Target Start/End: Complemental strand, 34044832 - 34044574
Alignment:
| Q |
18 |
ccttgctctgttcagcaacacacccttcctctccaacattacgccttcaccgtcgcattatatgaccttcaccagcttccgtcgactgctacaccacaac |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34044832 |
ccttgctctgttcagcaacacacccttcctctccaacattacgccttcaccgttgcattatatgaccttcaccagcttccgtcgactgctacaccacaac |
34044733 |
T |
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| Q |
118 |
tttagactttgccgccaccgtctattctgtttgtttactacttaaaacttcaaaatttaatctcaatctctttcaatacacgtgttatatttcttttgca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34044732 |
tttagactttgccgccaccgtctattctgtttgtttactacttaaaacttcaaaatttaatctcaatctctttcaatacacgtgttatatttcttttgca |
34044633 |
T |
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| Q |
218 |
-tttgtgtacatggattattaa-tattaatattaaatctcataatcttctgatttttgg |
274 |
Q |
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||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||| |
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| T |
34044632 |
ttttgtgtacatggattattaattattaatcttaaatctcataatcttccgatttttgg |
34044574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 274 - 330
Target Start/End: Complemental strand, 34044519 - 34044463
Alignment:
| Q |
274 |
ggttaaactattaataaatcataactaaattatgttggtataggttaaccttgagat |
330 |
Q |
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|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
34044519 |
ggttaaactattaataaatcataactaaattaatttgttataggttaaccttgagat |
34044463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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