View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12598_high_48 (Length: 350)
Name: NF12598_high_48
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_high_48 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 15 - 334
Target Start/End: Original strand, 37242458 - 37242777
Alignment:
| Q |
15 |
gggagaagccttcaatttacaaagtaccctcacaagtcacggagttgaacaaaaatgcctttaaaccccaagcaatttcctttggtccttaccattatgg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37242458 |
gggagaagccttcaatttacaaagtaccctcacaagtcacggagttgaacaaaaatgcctttaaaccccaagcaatttcctttggtccttaccattatgg |
37242557 |
T |
|
| Q |
115 |
agaggagaatttaaagcttatggaaaagcacaagcatcgagccctccttcattttttaaagaggtgtggaaagcccgttgagttgttattccaacgcttg |
214 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37242558 |
ggaggaaaatttaaagcttatggaaaagcacaagcatcgagccctccttcattttttaaagaggtgtggaaagcccgttgagttgttattccaacgcttg |
37242657 |
T |
|
| Q |
215 |
aatcaagtggctaaagagttgaaagactcgtataagtcacttgatccaatttggacaaacaacacaccaaaattcattgaaatgatgattcttgatggtt |
314 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37242658 |
aatcaagtggctaaagagttgaaagactcatataagtcacttgatccaatttggacaaacaacacaccaaaattcattgaaatgatgattcttgatggtt |
37242757 |
T |
|
| Q |
315 |
gttttattttggagattttg |
334 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
37242758 |
gttttattttggagattttg |
37242777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 15 - 333
Target Start/End: Original strand, 37304538 - 37304858
Alignment:
| Q |
15 |
gggagaagccttcaatttacaaagtaccctcacaagtcacggagttgaacaaaaatgcctttaaaccccaagcaatttcctttggtccttaccattatgg |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |||| || || |||| ||||| ||||||||||| ||||||||||| |||||||| |
|
|
| T |
37304538 |
gggagaagccttcaatttacaaagtaccctcacaactcacggagctgaaaaagaaggcctacaaaccacaagcaatttcatttggtccttaacattatgg |
37304637 |
T |
|
| Q |
115 |
agaggagaatttaaagcttat--ggaaaagcacaagcatcgagccctccttcattttttaaagaggtgtggaaagcccgttgagttgttattccaacgct |
212 |
Q |
| |
|
||||||||||||| || |||| |||| ||||||||||| ||||||| ||| ||| |||||||| || ||| ||| ||||||| ||||| ||| | |
|
|
| T |
37304638 |
agaggagaatttacagtttatatggaagagcacaagcatagagcccttgttcgtttcttaaagagatgccaaaaacccattgagttcttatttcaatgta |
37304737 |
T |
|
| Q |
213 |
tgaatcaagtggctaaagagttgaaagactcgtataagtcacttgatccaatttggacaaacaacacaccaaaattcattgaaatgatgattcttgatgg |
312 |
Q |
| |
|
|| |||||||||| |||||||| | |||||||||||| |||||||||||||||||| ||| | |||||||| ||| || ||||||||||||||||||| |
|
|
| T |
37304738 |
tggatcaagtggccaaagagttaagagactcgtataaaccacttgatccaatttggataaatgatacaccaaagttccttcaaatgatgattcttgatgg |
37304837 |
T |
|
| Q |
313 |
ttgttttattttggagatttt |
333 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
37304838 |
ttgttttattttggagatttt |
37304858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 25 - 327
Target Start/End: Original strand, 37273171 - 37273473
Alignment:
| Q |
25 |
ttcaatttacaaagtaccctcacaagtcacggagttgaacaaaaatgcctttaaaccccaagcaatttcctttggtccttaccattatggagaggagaat |
124 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||| |||| |||| ||||||||| ||||| |||||||||||||| ||||| || |
|
|
| T |
37273171 |
ttcaatttacaaagtaccctcacaactcacggagttgaacgaaaaagcctacgtgccccgagcaatttcatttggaccttaccattatgggaaggagcat |
37273270 |
T |
|
| Q |
125 |
ttaaagcttatggaaaagcacaagcatcgagccctccttcattttttaaagaggtgtggaaagcccgttgagttgttattccaacgcttgaatcaagtgg |
224 |
Q |
| |
|
||||||| ||||||| |||||||||||||||| || |||||||| |||||||||||||| || || || | | | |||||||| ||| || |||||| |
|
|
| T |
37273271 |
ttaaagcctatggaagagcacaagcatcgagctcttcttcatttcctaaagaggtgtggagagtcctttaaatcgatattccaaaaattggataaagtgg |
37273370 |
T |
|
| Q |
225 |
ctaaagagttgaaagactcgtataagtcacttgatccaatttggacaaacaacacaccaaaattcattgaaatgatgattcttgatggttgttttatttt |
324 |
Q |
| |
|
|| ||||||||| ||||||||||||||| | |||| ||||||||| ||| ||||| ||||||||||| ||||||||||||| ||||||||||| ||||| |
|
|
| T |
37273371 |
ctcaagagttgagagactcgtataagtcgcatgattcaatttggataaatgacacatcaaaattcattcaaatgatgattctcgatggttgtttcatttt |
37273470 |
T |
|
| Q |
325 |
gga |
327 |
Q |
| |
|
||| |
|
|
| T |
37273471 |
gga |
37273473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 15 - 283
Target Start/End: Original strand, 37964705 - 37964973
Alignment:
| Q |
15 |
gggagaagccttcaatttacaaagtaccctcacaagtcacggagttgaacaaaaatgcctttaaaccccaagcaatttcctttggtccttaccattatgg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||| ||||| |||| |||||||||||||||||||||| |||| |
|
|
| T |
37964705 |
gggagaagccttcaatttacaaagtaccatcacaagtcacggatttgaacaaaaaggcctacaaaccacaagtaatttcctttggtccttaccataatgg |
37964804 |
T |
|
| Q |
115 |
agaggagaatttaaagcttatggaaaagcacaagcatcgagccctccttcattttttaaagaggtgtggaaagcccgttgagttgttattccaacgcttg |
214 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||| || ||| ||| ||||||||||||| |||| || |||||||||||| ||||| ||| |
|
|
| T |
37964805 |
ggaggagaatttaaagcttatggaagagcacaaatatcgagcgcttgttcgtttcttaaagaggtgtgaaaagtccattgagttgttatatcaacgtttg |
37964904 |
T |
|
| Q |
215 |
aatcaagtggctaaagagttgaaagactcgtataagtcacttgatccaatttggacaaacaacacacca |
283 |
Q |
| |
|
|| ||||||| || |||||||||||||||| || ||| ||| ||||||||||||| |||||||| |
|
|
| T |
37964905 |
gatatagtggctcaaaagttgaaagactcgtacaatctactagattcaatttggacaaatgacacacca |
37964973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 62 - 334
Target Start/End: Original strand, 37317655 - 37317927
Alignment:
| Q |
62 |
aacaaaaatgcctttaaaccccaagcaatttcctttggtccttaccattatggagaggagaatttaaagcttatggaaaagcacaagcatcgagccctcc |
161 |
Q |
| |
|
|||||||| |||| ||||| ||||||||||| ||||||||||| |||||||| ||||| |||| | | ||||||| | ||||||||| |||| || | |
|
|
| T |
37317655 |
aacaaaaaagcctacaaaccacaagcaatttcatttggtccttatcattatggggaggaacatttgatggctatggaagaacacaagcatagagctcttc |
37317754 |
T |
|
| Q |
162 |
ttcattttttaaagaggtgtggaaagcccgttgagttgttattccaacgcttgaatcaagtggctaaagagttgaaagactcgtataagtcacttgatcc |
261 |
Q |
| |
|
||||||| |||| |||||||| |||||| ||||||||||||||||| | ||||||||| | |||||||| ||| ||||| ||| |||||||||| |
|
|
| T |
37317755 |
ttcatttcttaaggaggtgtgaaaagcctattgagttgttattccaaaaaattgatcaagtggttctagagttgagagattcgtacaagccacttgatcc |
37317854 |
T |
|
| Q |
262 |
aatttggacaaacaacacaccaaaattcattgaaatgatgattcttgatggttgttttattttggagattttg |
334 |
Q |
| |
|
|||||||| | ||| |||||| || || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37317855 |
aatttggatattggacaaaccaaagtttgttcaaatgatgattcttgatggttgttttattttggagattttg |
37317927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 24014185 - 24014136
Alignment:
| Q |
25 |
ttcaatttacaaagtaccctcacaagtcacggagttgaacaaaaatgcct |
74 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
24014185 |
ttcaatctacaaagtaccctcacaagtcacaaagttgaacaaaaaggcct |
24014136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 16573466 - 16573316
Alignment:
| Q |
18 |
agaagccttcaatttacaaagtaccctcacaagtcacggagttgaacaaaaatgcctttaaaccccaagcaatttcctttggtccttaccattatggaga |
117 |
Q |
| |
|
|||||| ||| ||||||||||||||||||| | | |||| | |||||||||| || ||||| ||| |||||| ||||||||||| ||| |||| || |
|
|
| T |
16573466 |
agaagcgttccatttacaaagtaccctcacggctgaaggagctaaacaaaaatgtctacaaaccacaaaaaatttcgtttggtccttatcatcatggtga |
16573367 |
T |
|
| Q |
118 |
ggagaatttaaagcttatggaaaagcacaagcatcgagccctccttcattt |
168 |
Q |
| |
|
|||| |||| | | |||||| || |||||||| ||||||| ||||||| |
|
|
| T |
16573366 |
ggagcatttgatggcaatggaagagtacaagcatagagcccttattcattt |
16573316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 331
Target Start/End: Complemental strand, 16573204 - 16573167
Alignment:
| Q |
294 |
aaatgatgattcttgatggttgttttattttggagatt |
331 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
16573204 |
aaatgatgattcttgatggttgtttcatcttggagatt |
16573167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University