View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_high_5 (Length: 624)
Name: NF12598_high_5
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 3e-99; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 334 - 604
Target Start/End: Original strand, 38644284 - 38644553
Alignment:
| Q |
334 |
ttgttaattttgttacacttgttcccagaagatgatgtggttgtgttttacattggaaaattctagttcagggaccaaacaagtgaaaaatgaagaagag |
433 |
Q |
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| T |
38644284 |
ttgttaattttgttacacttgttccctgaagatgatgttattgtgttttacatt--aaaattctagttcagggaccaaacaagtgaaaaatgaagaagaa |
38644381 |
T |
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| Q |
434 |
atgaagcactgcatattgatgaggaaatcaattgaaggagaagtagttgaaaaagggttgggtaatggcagcgaaaaaaccatgtgnnnnnnngtaggta |
533 |
Q |
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| T |
38644382 |
atgaagcactgcatattgatgaggaaatcaattgaaggagaagtagttgaaaaagggttgggtagtggcagcgaaaaaaccatgtgtttttttgtaggta |
38644481 |
T |
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| Q |
534 |
tggttctatccacaaccacaagg-gnnnnnnnnaagttcttttgggaggaaatggtgttccagagaagtgaa |
604 |
Q |
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| T |
38644482 |
tggttctatccacaaccacaaggttttttttttaagttcttttgggaggaaatggtgttccagagaagtgaa |
38644553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 38643955 - 38644159
Alignment:
| Q |
16 |
caacaagttccttatttgacacaagaaacaatgacccaaatgcaaaatatggctacggctacagttactccatcaccaccaacgccgccgccgtgccgta |
115 |
Q |
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| T |
38643955 |
caacaagttccttatttgacacaagaaacaatgacccaaatgcaaaatatggctacggttacagttactccatcaccaccaacgccgccaccgtgctgta |
38644054 |
T |
|
| Q |
116 |
aacatgagaagacgaagctacaagtaagcgaaggatcagagtgggaactcagaaccggaatcataatcgaaatggtcggagtgagcttaggtagacggaa |
215 |
Q |
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| T |
38644055 |
agtatgagaagacgaagctacaagtaagcgaaggatcagagtgggaactcagaaccggaatcagaatcgaaatggtcggagtgagcttaggtagacgaaa |
38644154 |
T |
|
| Q |
216 |
aggga |
220 |
Q |
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||||| |
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| T |
38644155 |
aggga |
38644159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 106 - 177
Target Start/End: Original strand, 13597704 - 13597775
Alignment:
| Q |
106 |
ccgtgccgtaaacatgagaagacgaagctacaagtaagcgaaggatcagagtgggaactcagaaccggaatc |
177 |
Q |
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| T |
13597704 |
ccgtgccggaaacaagagaagacgaagttacaagtaagcaaaggatcagagagggaactcataaccggaatc |
13597775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 256
Target Start/End: Original strand, 38644173 - 38644206
Alignment:
| Q |
223 |
ccaccgccgaaggttgttggggacacaaacgacg |
256 |
Q |
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| T |
38644173 |
ccaccgccggaggttgttggggacacaaacgacg |
38644206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 7e-26; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 73 - 177
Target Start/End: Original strand, 38235504 - 38235608
Alignment:
| Q |
73 |
gctacagttactccatcaccaccaacgccgccgccgtgccgtaaacatgagaagacgaagctacaagtaagcgaaggatcagagtgggaactcagaaccg |
172 |
Q |
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| T |
38235504 |
gctacagctactccaccaccaccaccaccgccaccgtgccggaaacaagagaagatgaagttacaagtaaacgaaggatcagagagggaactcagaaccg |
38235603 |
T |
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| Q |
173 |
gaatc |
177 |
Q |
| |
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||||| |
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| T |
38235604 |
gaatc |
38235608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 38235353 - 38235404
Alignment:
| Q |
16 |
caacaagttccttatttgacacaagaaacaatgacccaaatgcaaaatatgg |
67 |
Q |
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| T |
38235353 |
caacaagttccaaatttgacacaagaaacaatgacccaaatgcaaaatatgg |
38235404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 410 - 476
Target Start/End: Complemental strand, 39272986 - 39272920
Alignment:
| Q |
410 |
aaacaagtgaaaaatgaagaagagatgaagcactgcatattgatgaggaaatcaattgaaggagaag |
476 |
Q |
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| T |
39272986 |
aaacaagtgaaaaatgaagaagaaattatgcattgcatattgatgaggaaaacaattgaacgagaag |
39272920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 100 - 177
Target Start/End: Original strand, 37609886 - 37609963
Alignment:
| Q |
100 |
ccgccgccgtgccgtaaacatgagaagacgaagctacaagtaagcgaaggatcagagtgggaactcagaaccggaatc |
177 |
Q |
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| T |
37609886 |
ccgccaccgtgccggaaacaagagaagacgaagttacaagtaagcgaaggatcagagagggaactcataaccggaatc |
37609963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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