View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_high_50 (Length: 342)
Name: NF12598_high_50
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_high_50 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 22 - 340
Target Start/End: Complemental strand, 33538231 - 33537902
Alignment:
| Q |
22 |
agagttagtggaaaagttacagagagcacacccagaatgctattat-----------aactcagctaacttttgaacttttaatgaaagtaggttttcaa |
110 |
Q |
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| T |
33538231 |
agagttagtggaaaagttacagagagcacacctagaatgctattattacaaagaaataactcagctaacttttgaacttttaatgaaagtaggttttcaa |
33538132 |
T |
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| Q |
111 |
aatagtatgattaaaaaatgatagggtggatgaaaaaagtactcgtgataagcctctcatagtggtaagtatttattcccaagacctacataaacaaaat |
210 |
Q |
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| T |
33538131 |
aatagtatgattaaaaaatgatagggtggatgaaaaaagtactcgtaataagcctctcatagtggtaagtatttattcctaagacctaaataaacaaaat |
33538032 |
T |
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| Q |
211 |
gaaaagaaaataaatcgaattgctgcattgctactattacattacagaagtaatgcacgactaacagcatcttccgtctctctagaacaaatgtgcagca |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
33538031 |
gaaaagaaaataaatcgaattgctgcattgctactattacattacagaagtaatgcacaactaacaacatcttccgtctctctagaacaaatgtccagca |
33537932 |
T |
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| Q |
311 |
ttacttgatcagtcgaagaaagtatctgtg |
340 |
Q |
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| T |
33537931 |
tcacttgatcagtcgaagaaagtatctgtg |
33537902 |
T |
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