View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_high_52 (Length: 338)
Name: NF12598_high_52
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_high_52 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 17 - 329
Target Start/End: Complemental strand, 36127668 - 36127356
Alignment:
| Q |
17 |
acaatcctatttcttcatatagccttatatcgagcggcgagagagacgatattggtagaagatggccaaaagatgaagtgttggcattgataaacttgag |
116 |
Q |
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| T |
36127668 |
acaatcctatttcttcatatagccttatatcgagcggcgagagagacgatattggtagaagatggccaaaagatgaagtgttggcattgataaacttgag |
36127569 |
T |
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| Q |
117 |
gtgcaacaacaacaatgaagaaaaggaaggaaacagcaataacaaggcaccactttgggagagaatttcacaaggaatgttggagttaggatacaagaga |
216 |
Q |
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| T |
36127568 |
gtgcaacaacaacaatgaagaaaaggaaggaaacagcaataacaaggcaccactttgggagagaatttcacaaggaatgttggagttaggatacaagaga |
36127469 |
T |
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| Q |
217 |
agtgcaaagagatgcaaagagaagtgggagaatatcaacaagtatttcagaaaaacaaaggatgctaataggaaaagatcacttgattcaagaacttgtc |
316 |
Q |
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| T |
36127468 |
agtgcaaagagatgcaaagagaagtgggagaatatcaacaagtatttcagaaaaacaaaggatgctaataggaaaagatcacttgattcaagaacttgtc |
36127369 |
T |
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| Q |
317 |
cttactttcatct |
329 |
Q |
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| T |
36127368 |
cttactttcatct |
36127356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 279
Target Start/End: Original strand, 47422822 - 47422929
Alignment:
| Q |
172 |
tgggagagaatttcacaaggaatgttggagttaggatacaagagaagtgcaaagagatgcaaagagaagtgggagaatatcaacaagtatttcagaaaaa |
271 |
Q |
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| T |
47422822 |
tgggagagaatctctgaagggatgtttgagttgggatacaagagaagcgcaaagaggtgtaaagaaaaatgggaaaacataaataagtattttaaaaaga |
47422921 |
T |
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| Q |
272 |
caaaggat |
279 |
Q |
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| T |
47422922 |
caaaggat |
47422929 |
T |
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