View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_high_54 (Length: 328)
Name: NF12598_high_54
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_high_54 |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 324
Target Start/End: Complemental strand, 12924999 - 12924692
Alignment:
| Q |
17 |
aataataagtgtttaagcggaaattttaaatgtgaaagctaattttctgtcatctactaattatgcatcaggaactgtaattagttttagatctgttgat |
116 |
Q |
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| T |
12924999 |
aataataagtgtttaagcggaaattttaaatgtgaaagctaattttctgtcatctactaattatgcatcaggaagtgtaattagttttagatctgttgat |
12924900 |
T |
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| Q |
117 |
atatcatgatatgtgtgcgattttttaatgcaattgtgtttgcaacttccaagcacttggaattattaggcatttcgtaacatttgaatttccagatata |
216 |
Q |
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| T |
12924899 |
atatcatgatatgtgtgtgattttccaatgcaattgtgtttgcaacttgcaagcacttggaattattaggcatttcctaccatttgaatttccagatata |
12924800 |
T |
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| Q |
217 |
attaagtgattaagtttaacagttgaggtttcaacagattgaaattattgttaatctctctgtttcagactttcttgttggaagaaccttcttctgtccc |
316 |
Q |
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| T |
12924799 |
attaagtgattaagtttaacagttgaggtttcaacagattggaattattgttaatctctctgtttcagactttcttgttggaagaaccttcttctgtcac |
12924700 |
T |
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| Q |
317 |
tttgcttc |
324 |
Q |
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| T |
12924699 |
tttgcttc |
12924692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 218
Target Start/End: Complemental strand, 12925056 - 12924994
Alignment:
| Q |
156 |
ttgcaacttccaagcacttggaattattaggcatttcgtaacatttgaatttccagatataat |
218 |
Q |
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| T |
12925056 |
ttgcagcttccaatcacttggaattataagacattttgtaccatttgaatttcaagaaataat |
12924994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 77 - 210
Target Start/End: Complemental strand, 22383030 - 22382897
Alignment:
| Q |
77 |
ttatgcatcaggaactgtaattagttttagatctgttgatatatcatgatatgtgtgcgattttttaatgcaattgtgtttgcaacttccaagcacttgg |
176 |
Q |
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|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
22383030 |
ttatacatcaggaactgtaattagtttttgatctgttgatatatcatgatatgtgtgtgatttttcaatgcaattgtgtttgcaacttccaagcacttgg |
22382931 |
T |
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| Q |
177 |
aattattaggcatttcgtaacatttgaatttcca |
210 |
Q |
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| T |
22382930 |
aattattaggcattttgtaccgtttgaatttcca |
22382897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 313
Target Start/End: Complemental strand, 22382861 - 22382825
Alignment:
| Q |
277 |
tgtttcagactttcttgttggaagaaccttcttctgt |
313 |
Q |
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| T |
22382861 |
tgtttcagactttcgtgttggaagaaccttcttctgt |
22382825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 96 - 222
Target Start/End: Original strand, 30790087 - 30790213
Alignment:
| Q |
96 |
attagttttagatctgttgatatatcatgatatgtgtgcgattttttaatgcaattgtgtttgcaacttccaagcacttggaattattaggcatttcgta |
195 |
Q |
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||||| ||| ||||| |||||||||||||||||||| | ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
30790087 |
attaggttttgatctattgatatatcatgatatgtgcgtgatttttcaatgcaattgtgtctgcaacttccaagcacttggaattattaggcatttcgtg |
30790186 |
T |
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| Q |
196 |
acatttgaatttccagatataattaag |
222 |
Q |
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| T |
30790187 |
cgatttgaatttccagaaataattaag |
30790213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 277 - 324
Target Start/End: Original strand, 30790949 - 30790996
Alignment:
| Q |
277 |
tgtttcagactttcttgttggaagaaccttcttctgtccctttgcttc |
324 |
Q |
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||||||||||| ||||||||||||||||||||||| | ||||||||| |
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| T |
30790949 |
tgtttcagactatcttgttggaagaaccttcttctataactttgcttc |
30790996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 120
Target Start/End: Original strand, 30789903 - 30789952
Alignment:
| Q |
71 |
tactaattatgcatcaggaactgtaattagttttagatctgttgatatat |
120 |
Q |
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| T |
30789903 |
tactaattatgcatcagaaacgatgattagttttagatatgttgatatat |
30789952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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