View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_high_57 (Length: 314)
Name: NF12598_high_57
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_high_57 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 38997091 - 38996795
Alignment:
| Q |
1 |
tacatatgcaaagcacaacatagtataacagtataacaaccaaattaaaacacagaataattttcaaccacagttagagaaaaattattaaatttatcaa |
100 |
Q |
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| T |
38997091 |
tacatatgcaaagcacaacatagtataacagtataacaaccaaattaaaacacagaataattttaaaccatagttagagaaaaattattaaatttatcaa |
38996992 |
T |
|
| Q |
101 |
aacacaaataacccaccctaagacccaaacaagtcatcaattttatagcaaccaaaatcaaacagaaattcaaagcctctgtgaaaatcatgccgnnnnn |
200 |
Q |
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| T |
38996991 |
aacacaaataacccaccctaaaacccaaacaagtcatcaattttataacaaccaaaatcaaacagaaattcaaagcctctgtgaaaatcatgccgttttt |
38996892 |
T |
|
| Q |
201 |
nnaatgattaatgttagtaacaagttgttagattaatatttactcattcattcggattttaatccggcaccttaaactccttatctcttataggaaa |
297 |
Q |
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| T |
38996891 |
ttaatgattaatgttagtaacaagttgttagattaatatttactcattcgttcggattttaatccggcaccttaaactccttatctcttataggaaa |
38996795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 5805207 - 5805175
Alignment:
| Q |
210 |
aatgttagtaacaagttgttagattaatattta |
242 |
Q |
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| T |
5805207 |
aatgttagtaataagttgttagattaatattta |
5805175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 254
Target Start/End: Original strand, 33257208 - 33257239
Alignment:
| Q |
223 |
agttgttagattaatatttactcattcattcg |
254 |
Q |
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| T |
33257208 |
agttgttagattaatatttactcattcattcg |
33257239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 3004849 - 3004890
Alignment:
| Q |
210 |
aatgttagtaacaagttgttagattaatatttactcattcat |
251 |
Q |
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| T |
3004849 |
aatgttagtaattagttgttagattaatatttgctcattcat |
3004890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 10799303 - 10799262
Alignment:
| Q |
210 |
aatgttagtaacaagttgttagattaatatttactcattcat |
251 |
Q |
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| T |
10799303 |
aatgttagtaattagttgttagattaatatttactccttcat |
10799262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 259
Target Start/End: Complemental strand, 35753149 - 35753093
Alignment:
| Q |
203 |
aatgattaatgttagtaacaagttgttagattaatatttactcattcattcggattt |
259 |
Q |
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|||||| ||||||| ||| | |||||||||||||||||||| ||||||||||||| |
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| T |
35753149 |
aatgataaatgttattaattatttgttagattaatatttacttcttcattcggattt |
35753093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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