View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12598_high_61 (Length: 301)
Name: NF12598_high_61
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_high_61 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 41013226 - 41012924
Alignment:
| Q |
1 |
aatatttacattagtacttagtttg----atctaaactaacagagcaccgcatacaataatacgtttaaaatacnnnnnnnnnt-taaactagctaaatt |
95 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||| |||||||| ||||||||||||| || ||||||| ||||||||||||||| |
|
|
| T |
41013226 |
aatatttacatgagtacttagtttgtttgatctaaactaaaagagcaccacatacaataatactttgaaaatacaaaaaaaaaaataaactagctaaatt |
41013127 |
T |
|
| Q |
96 |
taataaacttgta-gtattctaatataatagaccaaatgaggaacttccatgaaactcatcatgaacaagatttgcagcaactatggaattaaagatatt |
194 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41013126 |
taataaacttgtaagtattctaatataatagaccaaatgaggaacttccttgaaactcatcatgaacaagatttgcagcaactatggaattaaagatatt |
41013027 |
T |
|
| Q |
195 |
attccatttttcatcttcttcatcctcttcctcccctccaccaatgtggctccactcaactataggtttcttatcaatttcatcattcctcgcaaaccgt |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41013026 |
attccatttttcatcttcttcatcctcttcctccccaccaccaatgtggctccactcaactataggtttcttatcaatttcatcattcctcgcaaaccgt |
41012927 |
T |
|
| Q |
295 |
cct |
297 |
Q |
| |
|
||| |
|
|
| T |
41012926 |
cct |
41012924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University