View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_high_62 (Length: 297)
Name: NF12598_high_62
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_high_62 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 22 - 281
Target Start/End: Complemental strand, 23562744 - 23562485
Alignment:
| Q |
22 |
acgggtaactcacacttgagggtgaagattgttattatatcaagtgtgagtgagagttccacattcagtgaaaatatggatgttgagcactatataaatg |
121 |
Q |
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| T |
23562744 |
acggataactcaaacttgagggcgaagattgttattatatcaagtgtgagtgagagttccacattcagtggaaatatggatgtttaacactatataaatg |
23562645 |
T |
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| Q |
122 |
agagtgaactcatatacttaatgtcttaatattttaggttaaaatatgacgtcaaatttaattgtgtatatgttcaaagtccaacatgataatctacaat |
221 |
Q |
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|||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23562644 |
agagggaactcatatacctaatgtcttaatattttgggttaaaatatgacgtcaaatttaattgtgtatatgttcaaagtccaacatgataatctacaat |
23562545 |
T |
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| Q |
222 |
tttcctcgtgtcccaacaattataactattctctctttgaaataactcactcacattcat |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23562544 |
tttcctcgtgtcccaacaattataactattctctctttgaaataactcactcacattcat |
23562485 |
T |
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