View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12598_high_76 (Length: 257)
Name: NF12598_high_76
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_high_76 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 15 - 248
Target Start/End: Original strand, 51482381 - 51482614
Alignment:
| Q |
15 |
caatctgtacctttgaagcagtaattttgagtatatgtggagttgtacacaatctgccctccagtattttttatatccttgtacttcactgcccctagtc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51482381 |
caatctgtacctttgaagcagtaattttgagtatatgtggagttgtacacaatctgccctccagtattttttatatccttgtacttcactgcccctagtc |
51482480 |
T |
|
| Q |
115 |
cctgcgtagctttactataaattctacggttattaggatctgccaatctccacttataaccatagaagggtaaaccaagtgcaagtttgctttttggcac |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
51482481 |
cctgcgtagctttactataaattctacggttattaggatctgccaatctccacttataaccatagtagggtaaaccaagtgcaagtttgttttttggcac |
51482580 |
T |
|
| Q |
215 |
acctaaccctacccatttattgataccttcatct |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
51482581 |
acctaaccctacccatttattgataccttcatct |
51482614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 15 - 248
Target Start/End: Original strand, 51467471 - 51467704
Alignment:
| Q |
15 |
caatctgtacctttgaagcagtaattttgagtatatgtggagttgtacacaatctgccctccagtattttttatatccttgtacttcactgcccctagtc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
51467471 |
caatctgtacctttgaagcagtaattttgagcatatgtggagttgtacacaatctgtgccccatcattttttatatccttgtacttcactgcccctaatc |
51467570 |
T |
|
| Q |
115 |
cctgcgtagctttactataaattctacggttattaggatctgccaatctccacttataaccatagaagggtaaaccaagtgcaagtttgctttttggcac |
214 |
Q |
| |
|
|||||||||||||| || ||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51467571 |
cctgcgtagctttatcatgaattctatgtttattaggatctgccaaactccacttataaccatagaagggtaaaccaagtgcaagtttgctttttggcac |
51467670 |
T |
|
| Q |
215 |
acctaaccctacccatttattgataccttcatct |
248 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
51467671 |
acctaaccctacccattttgtgataccttcatct |
51467704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 47 - 248
Target Start/End: Original strand, 48423921 - 48424122
Alignment:
| Q |
47 |
atatgtggagttgtacacaatctgccctccagtattttttatatccttgtacttcactgcccctagtccctgcgtagctttactataaattctacggtta |
146 |
Q |
| |
|
||||||||| |||||||||| |||| | ||| |||| ||||||| ||||||||||||||||| || ||||| ||||||| | | ||||| | ||||| |
|
|
| T |
48423921 |
atatgtggaattgtacacaacctgcaccccaacatttattatatctttgtacttcactgccccaagcccctgtgtagcttgatcaaaaatttcatggtta |
48424020 |
T |
|
| Q |
147 |
ttaggatctgccaatctccacttataaccatagaagggtaaaccaagtgcaagtttgctttttggcacacctaaccctacccatttattgataccttcat |
246 |
Q |
| |
|
|||||||||| ||| |||||||| |||||||||| |||| ||| | ||| |||||||||||||| || |||||||| | |||||| |||||||||||| |
|
|
| T |
48424021 |
ttaggatctgacaaactccacttgaaaccatagaaaggtacacccaatgctagtttgctttttggaactcctaacccaatccattttgtgataccttcat |
48424120 |
T |
|
| Q |
247 |
ct |
248 |
Q |
| |
|
|| |
|
|
| T |
48424121 |
ct |
48424122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University