View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12598_high_80 (Length: 250)
Name: NF12598_high_80
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_high_80 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 3924112 - 3924352
Alignment:
| Q |
1 |
ctattttttccattatcaaaagcaaacacttggttcaatgatgagttgctggtttctaagaaaaatgttgttgcttttacgtttccaagtactacctcta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
3924112 |
ctattttttccattatcaaaagcaaacacttggttcaatgatgagttgctggtttctaagaaaaatgttgttgcttttgcgtttccaagtaccacctcta |
3924211 |
T |
|
| Q |
101 |
catagagattatggatattgggaaagtctatgacctttacaacccttacaaataagaactccatttcttcaacaaggtcatatctccttgtaagcttatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3924212 |
catagagattatggatattgggaaagtctatgacctttacaacccttacaaataagaattccatttcttcaacaaggtcatatctccttgtaagcttatc |
3924311 |
T |
|
| Q |
201 |
agcttcaaatgcagcattattgttaacactagtctcctttg |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3924312 |
agcttcaaatgcagcattattgttaacactagtctcctttg |
3924352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University