View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_high_82 (Length: 249)
Name: NF12598_high_82
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_high_82 |
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Alignment Details
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 81 - 234
Target Start/End: Original strand, 9211709 - 9211862
Alignment:
| Q |
81 |
tatacacaaataccgttataatactttgcacactagttgttcttgattgatccaaggaccataatcctctttgaattaggtcagaacacactagtcctaa |
180 |
Q |
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| T |
9211709 |
tatacacaaataccgttagaatactttccacactagttgttcttgattgatccaaggaccataatcctcttcgaattaggtcagaacacactagtcctaa |
9211808 |
T |
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| Q |
181 |
catattaagatctgacccaataannnnnnnggctcgcttcatatcgttatagct |
234 |
Q |
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| T |
9211809 |
catattaagatctgacccaataatttttttggctcgcttcatatcgtaatagct |
9211862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 9208488 - 9208571
Alignment:
| Q |
1 |
caaaataaaaagttaactctttaagatttgaagttaacctttactcttgtttgcttcattcaaca---tgtcattttgacaaat |
81 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
9208488 |
caaaataaaaagttaactctttaagatttgaagttaacctttactcttgtttgcttcattcaacatcttgtcattttgacaaat |
9208571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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