View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12598_high_89 (Length: 237)
Name: NF12598_high_89
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_high_89 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 41103471 - 41103691
Alignment:
| Q |
1 |
taaaatcatagcatatccgttaacaatatgattctactcatgcataatgttgaaactacccttaaattggcctttcgttatctatggtggcttgctgtgt |
100 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41103471 |
taaaatcatagcttatccgttaccaatatgattctactcatgcataatgttgaaactacctttaaattggcctttcgttatctatggtggcttgctgtgt |
41103570 |
T |
|
| Q |
101 |
ataataaggcaattgagaccttagtaaagttatactgtcttgcttaggattggtcgaaataagtgattggaggttagtaatatgctta-cagaattggat |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41103571 |
ataataaggcaattgagaccttagtaaagttatactgtcttgcttaggattggtcgaaataagtgattggaggttagtaatatgcttatcagaattggag |
41103670 |
T |
|
| Q |
200 |
ctgcaagattcatgggacctc |
220 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
41103671 |
ctgcaagattcatgggacctc |
41103691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 3 - 204
Target Start/End: Original strand, 41089098 - 41089287
Alignment:
| Q |
3 |
aaatcatagcatatccgttaacaatatgattctactcatgcataatgttgaaactacccttaaattggcctttcgttatctatggtggcttgctgtgtat |
102 |
Q |
| |
|
|||||||||| ||||| ||| || |||| ||||| |||||||||||||| |||||||| ||| ||||| |||||||||||||||||||||| |
|
|
| T |
41089098 |
aaatcatagcttatcccttaccattatggttctagtcatgcataatgttaaaactacctttagattggtctttcgttatctatggtggctt--------- |
41089188 |
T |
|
| Q |
103 |
aataaggcaattgagaccttagtaaagttatactgtcttgcttaggattggtcgaaataagtgattggaggttagtaatatgctta-cagaattggatct |
201 |
Q |
| |
|
||||||||||||| ||||| | || ||| ||||||||||||||||||| |||||| ||||||| |||||||||||||||||| ||||||||| || |
|
|
| T |
41089189 |
----aggcaattgagactttagttatgtcatattgtcttgcttaggattggtagaaatatgtgattgtaggttagtaatatgcttatgagaattggagct |
41089284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 172
Target Start/End: Original strand, 41081087 - 41081244
Alignment:
| Q |
2 |
aaaatcatagcatatccgttaacaatatgattctactcatgcataatgttgaaactacccttaaattggcctttcgttatctatggtggcttgctgtgta |
101 |
Q |
| |
|
||||||||||||||||| ||| ||||||| |||||||||||| ||||||| |||||| | ||| ||||| ||||| |||||||||||||||| |
|
|
| T |
41081087 |
aaaatcatagcatatcccttaccaatatggttctactcatgcctaatgttaaaactaactttagattggtctttcattatctatggtggctt-------- |
41081178 |
T |
|
| Q |
102 |
taataaggcaattgagaccttagtaaagttatactgtcttgcttaggattggtcgaaataagtgattggag |
172 |
Q |
| |
|
|||||||||||||||| || | || ||| ||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
41081179 |
-----aggcaattgagacctttgttatgtcatattgtcttgctcaggattggtagaaataagtgattggag |
41081244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 4132414 - 4132345
Alignment:
| Q |
33 |
tctactcatgcataatgttgaaactacccttaaattggcctttcgttatctatggtggcttgctgtgtat |
102 |
Q |
| |
|
|||||||||||||||| ||| ||||||| ||||||||| |||| ||||||||||| |||||||||||| |
|
|
| T |
4132414 |
tctactcatgcataatattgcaactacctttaaattggtcttttactatctatggtgtcttgctgtgtat |
4132345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University