View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_high_9 (Length: 568)
Name: NF12598_high_9
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 478
Target Start/End: Complemental strand, 29280952 - 29280492
Alignment:
| Q |
18 |
cttcatagataaacacttatgctataattgtttataggaaaccaactttcccnnnnnnnatatgatcttttgaaaacaaaagagnnnnnnnttgtgatac |
117 |
Q |
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| T |
29280952 |
cttcatagataaacacttatgctataattgtttataggaaaccagctttccctttttttatatgatcttttgaaaacaaaagagaaaaaaattgtgatac |
29280853 |
T |
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| Q |
118 |
ctgagaattgacaacttctgggacaggttctccttctgctggaggcaatggagatataacatttgctcttctctttgttttcttggtaattgtattgcat |
217 |
Q |
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| T |
29280852 |
ctgagaattgacaacttctgggacaggttctccttctgctggaggcaatggagatataacgtttgctcttctctttgttttcttggtaattgtattgcat |
29280753 |
T |
|
| Q |
218 |
atagcttgaggctccactataccttttatggtaacttcatttttagccatgtcaataactactccctcaactcctgttaaaagataaacataaaagaaaa |
317 |
Q |
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| T |
29280752 |
atagcttgaggctccactataccttttatggtaacttcatttttagccatgtcaataactactccctcaactcctgttaaaagataaacataaaagaaaa |
29280653 |
T |
|
| Q |
318 |
tgagtacacatgatgcatgcatgacatttggtaactaaaatactagagaaaaatgtaaccaaacatgtacctctcattttcattattgatctttgaatct |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
29280652 |
tgagtacacatgatgcatgcatgacatttggtaactaaaaaactagacaaaaatgtaaccaaacatgtacctctcattttcattatagatctttgaatct |
29280553 |
T |
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| Q |
418 |
tctttgcacatccaacacaatgcaaatccacaaaaagcacacatggttctggtggtttagg |
478 |
Q |
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| T |
29280552 |
tctttgcacatccaacacaatgcaaatccacaaaaagtacacatggttctggtggtttagg |
29280492 |
T |
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Back To:
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Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 113 - 317
Target Start/End: Original strand, 42525632 - 42525834
Alignment:
| Q |
113 |
gatacctgagaattgacaacttctgggacaggttctccttctgctggaggcaatggagatataacatttgctcttctctttgttttcttggtaattgtat |
212 |
Q |
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||||||||||| || ||||||||||| | ||| |||||||||||| ||||||||||||||||| || || |||||||||||||||| || || ||| |
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| T |
42525632 |
gatacctgagagttaacaacttctggtataggctctccttctgcttctggcaatggagatataactttggccattctctttgttttctttgttataatat |
42525731 |
T |
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| Q |
213 |
tgcatatagcttgaggctccactataccttttatggtaacttcatttttagccatgtcaataactactccctcaactcctgttaaaagataaacataaaa |
312 |
Q |
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|||| || ||||||| |||||||| || |||||| ||||||||||||||||| ||||| || |||||||||||||||||| |||||||||| ||| |
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| T |
42525732 |
tgcagattccttgaggatccactattccctttatgaccacttcatttttagccatatcaatcaccactccctcaactcctgtt--aagataaacaaaaat |
42525829 |
T |
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| Q |
313 |
gaaaa |
317 |
Q |
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||||| |
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| T |
42525830 |
gaaaa |
42525834 |
T |
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