View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_low_10 (Length: 562)
Name: NF12598_low_10
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 9e-93; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 378 - 558
Target Start/End: Original strand, 43143050 - 43143230
Alignment:
| Q |
378 |
ttgaaaagtattactaatgagaatgaacacataacaatgaaatgtgtgacctcatctatctaattggtaccttaatccaaccatttgcaaaagcaatgcc |
477 |
Q |
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| T |
43143050 |
ttgagaagtattactaatgagaatgaacacataacaatgaaatgtgtgacctcatctatctaattggtaccttaatccaaccatttgcaaaagcaatgcc |
43143149 |
T |
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| Q |
478 |
taagattacaaaaggagttgacataccaaataaaataatataaggaagtggcgtcatcattggattctcttcttctctctc |
558 |
Q |
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| T |
43143150 |
taagattacaaaaggagttgacataccaaataaaataatataaggaagtggcgtcatcattggattctctccttctctctc |
43143230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 176 - 264
Target Start/End: Original strand, 43142799 - 43142887
Alignment:
| Q |
176 |
aaattactttaccaaaagtatcttcgttctttgtattattttgaagttaaaggttctgttacaaaacgatatgtatatgttttaacatg |
264 |
Q |
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| T |
43142799 |
aaattactttaccaaaagtatcttcgttctttgtattattttgaagttaaaggttctgttacaaaacgatgtgtatatgttttaacatg |
43142887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 323 - 378
Target Start/End: Original strand, 43142969 - 43143024
Alignment:
| Q |
323 |
ctggaattgaatattgctgacataatgtttgtaccgttacatatatgtgaaaaagt |
378 |
Q |
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| T |
43142969 |
ctggaattgaatattgctgacataatatttgtaccgttacatatatgtgaaaaagt |
43143024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 43142696 - 43142752
Alignment:
| Q |
20 |
gctacgtactaataccatcaattagtgttctcaaacaaagtgcgttcaattgtgtaa |
76 |
Q |
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| T |
43142696 |
gctatgtactaataccatcaattagtgttctcaaacaaattgcgttcaattgtgtaa |
43142752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 101 - 151
Target Start/End: Original strand, 43142744 - 43142794
Alignment:
| Q |
101 |
attgtgcaatttaatccacgtaattttgttcatgaggtccttgttctatac |
151 |
Q |
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| T |
43142744 |
attgtgtaatttaatccacgtaattttgttcatgaggttcttgttctatac |
43142794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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