View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_low_100 (Length: 229)
Name: NF12598_low_100
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_100 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 7 - 217
Target Start/End: Complemental strand, 39090002 - 39089802
Alignment:
| Q |
7 |
acggtgacgtcatcatctgtatgtttctccatttctctcttcatttcattttcatttccgttctattcaattaaaccctaaaatcaaacccta--atatg |
104 |
Q |
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| T |
39090002 |
acggtgacgtcatcatctgtatgtttctccatttctctcttcatttcattttcatttccgttctattcaattaaaccctaaaatcaaaccctaatatatg |
39089903 |
T |
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| Q |
105 |
ttttacg-cgtttcattatatgtaatgtaatagttaggtacaataattagttattgcatctaataaacagtagcaatctagtagaatgagattttctagt |
203 |
Q |
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| T |
39089902 |
ttttacgccttttcattatatgtaatgtaatagttaggtacaataattagttattgca-------------agcaatctagtagaatgagattttctagt |
39089816 |
T |
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| Q |
204 |
gttaatggaacttt |
217 |
Q |
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|||| ||||||||| |
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| T |
39089815 |
gttactggaacttt |
39089802 |
T |
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