View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_low_101 (Length: 227)
Name: NF12598_low_101
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_101 |
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| [»] chr6 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 4435392 - 4435619
Alignment:
| Q |
1 |
tcccagtcaatgctctgctcttcctctctc-tcgactcaagcttcggccaccttccgtaaaccaccacgagaccgtgagttgagagtgaacatattcata |
99 |
Q |
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|||||||| |||||||||||||| || ||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4435392 |
tcccagtcgatgctctgctcttcatc-ctcatcgactcaagctccggccaccttccgtaaaccaccacgagaccgtgagtcgagagtgaacatattcata |
4435490 |
T |
|
| Q |
100 |
ttca-ctagcatcaaatccagatctcgaaatcctctgcatctcgatctgttgattttaacccatgaaaaaacattgattttgctgacctaattccatttc |
198 |
Q |
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|||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
4435491 |
ttcatctcgcatcaaatccagatctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaatacattgattttgctgacctaatttcatttc |
4435590 |
T |
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| Q |
199 |
tccaggtatgcaatctatcccaatctgat |
227 |
Q |
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||||||||| ||||||||||||||||||| |
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| T |
4435591 |
tccaggtattcaatctatcccaatctgat |
4435619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 4091795 - 4091840
Alignment:
| Q |
182 |
tgacctaattccatttctccaggtatgcaatctatcccaatctgat |
227 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4091795 |
tgacctaattccatttctccaggtattcaatctatcccaatctgat |
4091840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 46595446 - 46595219
Alignment:
| Q |
1 |
tcccagtcaatgctctgctcttcctctctc-tcgactcaagcttcggccaccttccgtaaaccaccacgagaccgtgagttgagagtgaacatattcata |
99 |
Q |
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|||||||| |||||||||||||| || ||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
46595446 |
tcccagtcgatgctctgctcttcatc-ctcatcgactcaagctccggccaccttccgtaaaccaccacgagaccgtgagtcgagagtgaacatattcata |
46595348 |
T |
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| Q |
100 |
ttca-ctagcatcaaatccagatctcgaaatcctctgcatctcgatctgttgattttaacccatgaaaaaacattgattttgctgacctaattccatttc |
198 |
Q |
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|||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
46595347 |
ttcatctcgcatcaaatccagatctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaatacattgattttgctgacctaatttcatttc |
46595248 |
T |
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| Q |
199 |
tccaggtatgcaatctatcccaatctgat |
227 |
Q |
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||||||||| ||||||||||||||||||| |
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| T |
46595247 |
tccaggtattcaatctatcccaatctgat |
46595219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 25868590 - 25868817
Alignment:
| Q |
1 |
tcccagtcaatgctctgctcttcctctctc-tcgactcaagcttcggccaccttccgtaaaccaccacgagaccgtgagttgagagtgaacatattcata |
99 |
Q |
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||||||| ||||||||||||||| || ||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
25868590 |
tcccagtaaatgctctgctcttcatc-ctcatcgactcaagctccggccaccttccgtaaaccaccacgagaccgtgagtcgagagagaacatattcata |
25868688 |
T |
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| Q |
100 |
ttca-ctagcatcaaatccagatctcgaaatcctctgcatctcgatctgttgattttaacccatgaaaaaacattgattttgctgacctaattccatttc |
198 |
Q |
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|||| || ||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25868689 |
ttcatctcgcatcaaatccagatctcgaaatcctctgcatctcaatatgttggttttaacccatgaaaaaacattgattttgctgacctaattccattta |
25868788 |
T |
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| Q |
199 |
tccaggtatgcaatctatcccaatctgat |
227 |
Q |
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||||||||| ||||||||||||||||||| |
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| T |
25868789 |
tccaggtattcaatctatcccaatctgat |
25868817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 31 - 227
Target Start/End: Complemental strand, 16961289 - 16961092
Alignment:
| Q |
31 |
tcgactcaagcttcggccaccttccgtaaaccaccacgagaccgtgagttgagagtgaacatattcatattca-ctagcatcaaatccagatctcgaaat |
129 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| || |||||||||||||||||| |||| |
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| T |
16961289 |
tcgactcaagctccggccaccttccgtaaaccaccacgagaccatgagtcgagagtgaacatattcatattcatctcgcatcaaatccagatctcaaaat |
16961190 |
T |
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| Q |
130 |
cctctgcatctcgatctgttgattttaacccatgaaaaaacattgattttgctgacctaattccatttctccaggtatgcaatctatcccaatctgat |
227 |
Q |
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||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
16961189 |
cctctgcatctcgatttgttggttttaacccatgaaaaaacattgattttgctgacctaattccatttctccaggtattcaatctatcacaatctgat |
16961092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 37719687 - 37719461
Alignment:
| Q |
1 |
tcccagtcaatgctctgctcttcctctctc-tcgactcaagcttcggccaccttccgtaaaccaccacgagaccgtgagttgagagtgaacatattcata |
99 |
Q |
| |
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|||||||| |||||||||||||| || ||| |||||||||||| |||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
37719687 |
tcccagtcgatgctctgctcttcatc-ctcatcgactcaagctccggccatcttccataaaccaccacgagaccgtgagtcgagagtgaacatattcata |
37719589 |
T |
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| Q |
100 |
ttca-ctagcatcaaatccagatctcgaaatcctctgcatctcgatctgttgattttaacccatgaaaaaacattgattttgctgacctaattccatttc |
198 |
Q |
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|||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
37719588 |
ttcatctcgcatcaaatccagatctcgaaatcctctgcatctcgatctgttggttttaacc-atgaaaaaacattgattttgctgacctaatttcatttc |
37719490 |
T |
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| Q |
199 |
tccaggtatgcaatctatcccaatctgat |
227 |
Q |
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||||||||| ||||||||||||||||||| |
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| T |
37719489 |
tccaggtattcaatctatcccaatctgat |
37719461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 46 - 212
Target Start/End: Complemental strand, 30440855 - 30440694
Alignment:
| Q |
46 |
gccaccttccgtaaaccaccacgagaccgtgagttgagagtgaacatattcatattcactagcatcaaatccagatctcgaaatcctctgcatctcgatc |
145 |
Q |
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|||||||| ||||||||||||| |||| ||||||||||| ||||||||||||| || ||||||||||||||||| ||||||||| ||||| ||| |
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| T |
30440855 |
gccaccttacgtaaaccaccacaagactgtgagttgagaatgaacatattcat-----ctcacatcaaatccagatctcaaaatcctctacatctagatt |
30440761 |
T |
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| Q |
146 |
tgttgattttaacccatgaaaaaacattgattttgctgacctaattccatttctccaggtatgcaat |
212 |
Q |
| |
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||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||| |
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| T |
30440760 |
tgttggttttaacccatgaaaattcattgattttgctgacctaattccattttcccaggtattcaat |
30440694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 108 - 222
Target Start/End: Complemental strand, 38016644 - 38016530
Alignment:
| Q |
108 |
catcaaatccagatctcgaaatcctctgcatctcgatctgttgattttaacccatgaaaaaacattgattttgctgacctaattccatttctccaggtat |
207 |
Q |
| |
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|||||||| ||||||| ||||| ||||||||| ||||||||| ||| ||||||| |||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
38016644 |
catcaaattcagatcttaaaatcatctgcatcttgatctgttggtttcaacccattaaaatacattgattttgctcacctaattccatttctccaggtat |
38016545 |
T |
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| Q |
208 |
gcaatctatcccaat |
222 |
Q |
| |
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||||||||| |||| |
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| T |
38016544 |
tcaatctatctcaat |
38016530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 81823 - 81770
Alignment:
| Q |
120 |
atctcgaaatcctctgcatctcgatctgttgattttaacccatgaaaaaacatt |
173 |
Q |
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|||| |||||| ||| ||||||||||||||| ||| |||||||||||| ||||| |
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| T |
81823 |
atcttgaaatcatctacatctcgatctgttggtttcaacccatgaaaacacatt |
81770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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