View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_low_114 (Length: 203)
Name: NF12598_low_114
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_114 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 35450038 - 35450204
Alignment:
| Q |
20 |
agtactaacaccaaatagaccactacctgaaaaaggtaaacttttgcaggcagtgatgaaagctggtcctcttcttaaaactcttcttcttgcaggacca |
119 |
Q |
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| T |
35450038 |
agtactaacaccaaatagaccactacctgaaaaaggtaaacttttgcaggcagtgatgaaagctggtcctcttcttaaaactcttcttcttgcaggacca |
35450137 |
T |
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| Q |
120 |
cttcctcaatggaaacaccctcctccacctcttgagtcttttgagattccacctgtctctataccta |
186 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35450138 |
cttcctcaatggaaacaccctcctccacctcttgagtcttttgagattccacctgtctctataccta |
35450204 |
T |
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Target: chr4 (Bit Score: 60; Significance: 8e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 45 - 176
Target Start/End: Complemental strand, 21010434 - 21010303
Alignment:
| Q |
45 |
cctgaaaaaggtaaacttttgcaggcagtgatgaaagctggtcctcttcttaaaactcttcttcttgcaggaccacttcctcaatggaaacaccctcctc |
144 |
Q |
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|||||||||||||||||||| || ||||||||||||||||||||| | ||| | || ||| | |||||||||||| | |||||||||| ||| || || | |
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| T |
21010434 |
cctgaaaaaggtaaacttttacaagcagtgatgaaagctggtcctttgcttcagacccttttacttgcaggaccattacctcaatggagacatccaccac |
21010335 |
T |
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| Q |
145 |
cacctcttgagtcttttgagattccacctgtc |
176 |
Q |
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|||| | |||||||||||||||||||||||| |
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| T |
21010334 |
caccattggagtcttttgagattccacctgtc |
21010303 |
T |
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