View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_low_115 (Length: 201)
Name: NF12598_low_115
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_115 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 23 - 186
Target Start/End: Complemental strand, 18577698 - 18577535
Alignment:
| Q |
23 |
ccaaggtcaaaaccaagaaaaacacaagcaaggaccatttcagtacacaattgttcatattttatattgttaagctagtgtcatgaatcaacttatcaac |
122 |
Q |
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| T |
18577698 |
ccaaggtcaaaaccaagaaaaacacaagcaaggaccatttcagtacacaattgttcatattttatattgttaagctagtgtcatgaatcaacttatcaac |
18577599 |
T |
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| Q |
123 |
aatctcataatcctaacctattactaagtgaggatacttgaatgaagttatatggacgtctctg |
186 |
Q |
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| T |
18577598 |
aatctcataatcttaacctattactaagtgaggatacttgaatgaagttatatggacgtctctg |
18577535 |
T |
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Target: chr4 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 29 - 168
Target Start/End: Complemental strand, 10339727 - 10339588
Alignment:
| Q |
29 |
tcaaaaccaagaaaaacacaagcaaggaccatttcagtacacaattgttcatattttatattgttaagctagtgtcatgaatcaacttatcaacaatctc |
128 |
Q |
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| T |
10339727 |
tcaaaaccaagaaaaacacaagcaaagtccatttcagcacacaattgttcatattttatattgttaagctagtgtcatgaatcaacttatcaacaatctc |
10339628 |
T |
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| Q |
129 |
ataatcctaacctattactaagtgaggatacttgaatgaa |
168 |
Q |
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| T |
10339627 |
ataatcctaacctattactaagtgaggatacttgaatgaa |
10339588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 25 - 178
Target Start/End: Complemental strand, 29171074 - 29170924
Alignment:
| Q |
25 |
aaggtcaaaaccaagaaaaacacaagcaaggaccatttcagtacacaattgttcatattttatattgttaagctagtgtcatgaatcaacttatcaacaa |
124 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| |||||||||| | ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29171074 |
aaggtcaaaaccaagaaaaacactggcaaggaccatttcagtatgcaattgttcaaactttctattgttaagctagtgtcatgaatcaacttatcaacaa |
29170975 |
T |
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| Q |
125 |
tctcataatcctaacctattactaagtgaggatacttgaatgaagttatatgga |
178 |
Q |
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|||||||||||||| |||| ||||||||||||| | |||||| ||||||||| |
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| T |
29170974 |
tctcataatcctaagctat---taagtgaggatacctaaatgaaattatatgga |
29170924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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