View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12598_low_12 (Length: 543)
Name: NF12598_low_12
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Complemental strand, 3016812 - 3016272
Alignment:
| Q |
1 |
tcgacctgttctaactcgacgtggatatggatataaccttgaaccacccaagataggtctaaaatgctccgaacctttgccgggatcgccaaggtcattg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
3016812 |
tcgacctgttctaactcgacgtggatatggatataaccttgaaccacccaagataggtctaaaatgctccgaacctttgtcaggatcgccaaggtcattg |
3016713 |
T |
|
| Q |
101 |
tagaagtcatagtcatagattctatcccattccnnnnnnnctcccgttccattacctctcaatttatcaagctcttcttttcttagttccactaatgctg |
200 |
Q |
| |
|
||| |||||||||| || ||||||||||||||| || || ||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
3016712 |
tagtagtcatagtcgtatattctatcccattcctttctttcttccattccattacctctcaatttgtcaagctcttcttttcttagttccgctaatgctc |
3016613 |
T |
|
| Q |
201 |
taggtgtttgacttggaagatagcactgtcatgatgaactctattttgtaatttcatgtaatgttg--------caaaaaagtaatcaacatatagagca |
292 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||| ||||||| |||||| |||| |||| |
|
|
| T |
3016612 |
taggtgtttgacttggaagatagcactatcatgatgaactccattttgtaatttcgtgtaatgtaatttaataacaaaaaatcaatcaatatatcaagca |
3016513 |
T |
|
| Q |
293 |
atgtacattgttatatatgatggaacttactctattcgagaagaatagtctatcaaatttggttttcttgattggataaatccaagaattgcaatcaaag |
392 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3016512 |
-tgtacattgttatatataatggaacttactctattcgagaaaaatagtctatcaaatttggttttcttgattggataaatccaagaattgcaatcaaag |
3016414 |
T |
|
| Q |
393 |
tgaatgattctattggtacaagtctcaatagatgcagagagaagatagaatttcctgttttgtttgttttgaattacaaaagctcttggagttccaaaat |
492 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
3016413 |
tgaatgattctattggtacaagtctcaatagatgcagacagaagatagaatttcctgttttgtttgttttgaattacaaaagcccttggagttccaaaat |
3016314 |
T |
|
| Q |
493 |
gtgagtcaacctgtggtttaattttatatgtcttaacctttg |
534 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3016313 |
gtgagtcaacctgtagtttaattttatatgtcttaacctttg |
3016272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 1533048 - 1532996
Alignment:
| Q |
14 |
actcgacgtggatatggatataaccttgaaccacccaagataggtctaaaatg |
66 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1533048 |
actcgacgtggatatggatataaccttgaaccacctaagataggtctaaaatg |
1532996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 357 - 430
Target Start/End: Original strand, 37793379 - 37793452
Alignment:
| Q |
357 |
ttcttgattggataaatccaagaattgcaatcaaagtgaatgattctattggtacaagtctcaatagatgcaga |
430 |
Q |
| |
|
|||||||||| ||||||||||||| | |||||||||||||||| | ||| ||||| |||||||||||||||| |
|
|
| T |
37793379 |
ttcttgattgtataaatccaagaactataatcaaagtgaatgatgccattaatacaattctcaatagatgcaga |
37793452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 422
Target Start/End: Original strand, 2918361 - 2918414
Alignment:
| Q |
369 |
taaatccaagaattgcaatcaaagtgaatgattctattggtacaagtctcaata |
422 |
Q |
| |
|
||||||||||||||| | |||||||||||||| | | || |||||||||||||| |
|
|
| T |
2918361 |
taaatccaagaattgtactcaaagtgaatgatgccactgatacaagtctcaata |
2918414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University