View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12598_low_14 (Length: 533)
Name: NF12598_low_14
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 479; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 18 - 519
Target Start/End: Original strand, 34004858 - 34005360
Alignment:
| Q |
18 |
catttgggctcaaaacgtcactggtttattaaaggagaaagaatgcagtttattcaaggagaaataagaggcatgtttgcagatcaataagaccaagttg |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34004858 |
catttgggcccaaaacgtcactggtttattaaaggagaaagaatgcagtttattcaaggagaaataagaggcatgtttgcagatcaataagaccaagttg |
34004957 |
T |
|
| Q |
118 |
aaagttctacagtgttgta-tgaaggagattctcttattgtgtaataagaggataccaggttcctattagagacccccattcaaaattgcagtagtcatt |
216 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34004958 |
aaagttctacagtgttgtaatgaaggagattctcttattgtgtaataagaggataccaggttcctattagagacccccattcaaaattgcagtagtcatt |
34005057 |
T |
|
| Q |
217 |
cgcctaatcttatactagtatacaacttttattaataaataaaattttaatgtaaaaatggaagaattatagctcaaattatagcttcttctattggctc |
316 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
34005058 |
cgcctaatcttatactagtatacaactttaattaataaataaaattttaatgtaaaaatggaagaattaaagctcaaattatagcttcttctattggctc |
34005157 |
T |
|
| Q |
317 |
tagtgcgctatgaaatgaggatctagcataaaacaaggaacatgtttgagatgataaaacttcatacctcatcttctgacatcaatgtgaagcaacgccc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34005158 |
tagtgcgctatgaaatgaggatctagcataaaacaaggaacatgtttgagatgataaaacttcatacctcatcttctgacatcaatgtgaagcaacgccc |
34005257 |
T |
|
| Q |
417 |
agtctggacagctcttgcagtcctgcccgcccgatgaacataagtttttatgaatttgggcacgtcataattaatgacatttcttaccccttcaacattc |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
34005258 |
agtctggacagctcttgcagtcctgcccgcccgatgaacataagtttttatgaatttgggcacgtcataattaatgacatttcttaccccttcaacatcc |
34005357 |
T |
|
| Q |
517 |
atc |
519 |
Q |
| |
|
||| |
|
|
| T |
34005358 |
atc |
34005360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 21 - 523
Target Start/End: Original strand, 34015003 - 34015503
Alignment:
| Q |
21 |
ttgggctcaaaacgtcactggtttattaaaggagaaagaatgcagtttattcaaggagaaataagaggcatgtttgcagatcaataagaccaagttgaaa |
120 |
Q |
| |
|
|||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34015003 |
ttgggcccaaaacctcactggtttattgaaggagaaagaatgcagtttattcaaggagaaataagaggcatgtttgcagatcaataagaccaagttgaaa |
34015102 |
T |
|
| Q |
121 |
gttctacagtgttgta-tgaaggagattctcttattgtgtaataagaggataccaggttcctattagagacccccattcaaaattgcagtagtcattcgc |
219 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||| |||||||||| |
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|
| T |
34015103 |
gttctacagtgttgtaatgaaggagattctcttattgtgtaataaga---taccaagttcctattagagacccccattaaaaattgcaggagtcattcgc |
34015199 |
T |
|
| Q |
220 |
ctaatcttatactagtatacaacttttattaataaataaaattttaatgtaaaaatggaagaattatagctcaaattatagcttcttctattggctctag |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
34015200 |
ctaatcttatactagtatacaacttttattaataaataaaattttaatgtaaaaatggaagaattaaagctcaaattatagcttcttctattggctctag |
34015299 |
T |
|
| Q |
320 |
tgcgctatgaaatgaggatctagcataaaacaaggaacatgtttgagatgataaaacttcatacctcatcttctgacatcaatgtgaagcaacgcccagt |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34015300 |
tgcgctatgaaatgaggatctagcataaaacaaggaacatgtttgagatgataaaacttcatacctcatcttctgacatcaatgtgaagcaacgcccagt |
34015399 |
T |
|
| Q |
420 |
ctggacagctcttgcagtcctgcccgcccgatgaacataagtttttatgaatttgggcacgtcataattaatgacatttcttaccccttcaacattcatc |
519 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
34015400 |
ctggacagctcttgcagtcctgcccgcccgatgaacataagtttttatgaatttgggcacgtcataattaatgacatttcttaccccttcaacatccatc |
34015499 |
T |
|
| Q |
520 |
tcac |
523 |
Q |
| |
|
|||| |
|
|
| T |
34015500 |
tcac |
34015503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 21 - 519
Target Start/End: Complemental strand, 3213321 - 3212825
Alignment:
| Q |
21 |
ttgggctcaaaacgtcactggtttattaaaggagaaagaatgcagtttattcaaggagaaataagaggcatgtttgcagatcaataagaccaagttgaaa |
120 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3213321 |
ttgggcccaaaacatcactggtttattaaaggagaaagaatgcagtttattcaaggagaaataagaggcatgtttgcagatcaataagaccaagttgaaa |
3213222 |
T |
|
| Q |
121 |
gttctacagtgttgta-tgaaggagattctcttattgtgtaataagaggataccaggttcctattagagacccccattcaaaattgcagtagtcattcgc |
219 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
3213221 |
gttctacagtgttgtaatgaaggagattctcttattgtgtaataaga---taccaagttcctattagagacccccattaaaaattgcaggagtcattcgc |
3213125 |
T |
|
| Q |
220 |
ctaatcttatactagtatacaacttttattaataaataaaattttaatgtaaaaatggaagaattatagctcaaattatagcttcttctattggctctag |
319 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3213124 |
ctaatcttatactagtatacaactttaattaataaataaaattttaatgtaaaaatggaagaattaaagctcaaattatagcttcttctattggctctag |
3213025 |
T |
|
| Q |
320 |
tgcgctatgaaatgaggatctagcataaaacaaggaacatgtttgagatgataaaacttcatacctcatcttctgacatcaatgtgaagcaacgcccagt |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3213024 |
tgcgctatgaaatgaggatctagcataaaacaaggaacatgtttgagatgataaaacttcatacctcatcttctgacatcaatgtgaagcaacgcccagt |
3212925 |
T |
|
| Q |
420 |
ctggacagctcttgcagtcctgcccgcccgatgaacataagtttttatgaatttgggcacgtcataattaatgacatttcttaccccttcaacattcatc |
519 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3212924 |
ctggccagctcttgcagtcctgcccgcccgatgaacataagtttttatgaatttgggcacgtcataattaatgacatttcttaccccttcaacatccatc |
3212825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 21 - 519
Target Start/End: Original strand, 33152346 - 33152842
Alignment:
| Q |
21 |
ttgggctcaaaacgtcactggtttattaaaggagaaagaatgcagtttattcaaggagaaataagaggcatgtttgcagatcaataagaccaagttgaaa |
120 |
Q |
| |
|
|||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33152346 |
ttgggcccaaaacctcactggtttattgaaggagaaagaatgcagtttattcaaggagaaataagaggcatgtttgcagatcaataagaccaagttgaaa |
33152445 |
T |
|
| Q |
121 |
gttctacagtgttgta-tgaaggagattctcttattgtgtaataagaggataccaggttcctattagagacccccattcaaaattgcagtagtcattcgc |
219 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
33152446 |
gttctacagtgttgtaatgaaggagattctcttattgtgtaataaga---taccaagttcctattagagacccccattaaaaattgcaggagtcattcgc |
33152542 |
T |
|
| Q |
220 |
ctaatcttatactagtatacaacttttattaataaataaaattttaatgtaaaaatggaagaattatagctcaaattatagcttcttctattggctctag |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
33152543 |
ctaatcttatactagtatacaacttttattaataaataaaattttaatgtaaaaatggaagaattaaagctcaaattatagcttcttctattggctctag |
33152642 |
T |
|
| Q |
320 |
tgcgctatgaaatgaggatctagcataaaacaaggaacatgtttgagatgataaaacttcatacctcatcttctgacatcaatgtgaagcaacgcccagt |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33152643 |
tgcgctatgaaatgaggatctagcataaaacaaggaacatgtttgagatgataaaacttcatacctcatcttctgacatcaatgtgaagcaacgcccagt |
33152742 |
T |
|
| Q |
420 |
ctggacagctcttgcagtcctgcccgcccgatgaacataagtttttatgaatttgggcacgtcataattaatgacatttcttaccccttcaacattcatc |
519 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33152743 |
ctggccagctcttgcagtcctgcccgcccgatgaacatgagtttttatgaatttgggcacgtcataattaatgacatttcttaccccttcaacatccatc |
33152842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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