View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_low_18 (Length: 492)
Name: NF12598_low_18
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 15 - 478
Target Start/End: Complemental strand, 41129565 - 41129103
Alignment:
| Q |
15 |
ggaagaacgtctcgcattcagagtttcaaggttttttgnnnnnnntatggtttatttcccgttaaatgcacgataacagtagactaaaacaatgatttat |
114 |
Q |
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| T |
41129565 |
ggaagaacgtctcgcattcagagtttcaaggttttt-gaaaaaaatatggtttatttcctgttaaatgcacgataacagtagactaaaacaatgatttat |
41129467 |
T |
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| Q |
115 |
tagttacactattttggatgcaattttgtgcacaggataagagcttgtcaagtggactcttcttcctggagcttctcagtgcagtagagccaagggttgt |
214 |
Q |
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| T |
41129466 |
tagttacactattttggatgcaattttgtgtacaggataagagcttgtcaagtggactcttcttcctggagcttctcagtgcagtagagccaagggttgt |
41129367 |
T |
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| Q |
215 |
caactggaacctagtgacaaagggtcaaagtggtatgattccttgcaaatccaatagttaccattgagtttggctaatttttagatatatttctttagtt |
314 |
Q |
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| T |
41129366 |
caactggaacctagtgacaaagggtcaaagtggtatgattccttgcaaatccaatagttaccattgagtttggctaatttttagatatatttctttagtt |
41129267 |
T |
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| Q |
315 |
catgcactaaatcgacggattaataaagttgttgaaattatagatgatgagaagaagttgaatgccacttacataatcagtgtcgcacgaaagcttggtt |
414 |
Q |
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| T |
41129266 |
catgcactaaatcgacggattaataaagttgttgaaattatagatgatgagaagaagttgaacgccacttacataatcagtgtcgcacgaaagcttggtt |
41129167 |
T |
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| Q |
415 |
gttccatatatttgttacctgaggatattatggaggtatagtttccaccatcagtgagattcat |
478 |
Q |
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| T |
41129166 |
gttccatatatctgttacctgaggatattatggaggtatagtttccaccatcagtgagattcat |
41129103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 452
Target Start/End: Original strand, 42971836 - 42971939
Alignment:
| Q |
349 |
aaattatagatgatgagaagaagttgaatgccacttacataatcagtgtcgcacgaaagcttggttgttccatatatttgttacctgaggatattatgga |
448 |
Q |
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|||||| ||||||||| |||||||||||| | || || ||||||||||| || |||| ||||| |||||||| | ||||||||||||| || || || |
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| T |
42971836 |
aaattacagatgatgacaagaagttgaattcaacatatataatcagtgttgccagaaaacttggatgttccattttcctgttacctgaggacataatcga |
42971935 |
T |
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| Q |
449 |
ggta |
452 |
Q |
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|||| |
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| T |
42971936 |
ggta |
42971939 |
T |
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