View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12598_low_19 (Length: 484)

Name: NF12598_low_19
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12598_low_19
NF12598_low_19
[»] chr7 (2 HSPs)
chr7 (150-473)||(45046824-45047145)
chr7 (312-364)||(19421371-19421424)
[»] chr2 (4 HSPs)
chr2 (323-390)||(41314101-41314169)
chr2 (312-365)||(6006898-6006952)
chr2 (312-368)||(31778163-31778220)
chr2 (322-369)||(6714313-6714361)
[»] chr5 (4 HSPs)
chr5 (296-390)||(7085618-7085714)
chr5 (312-365)||(24158174-24158228)
chr5 (312-368)||(21042582-21042639)
chr5 (296-368)||(21236354-21236427)
[»] chr4 (4 HSPs)
chr4 (309-380)||(49287977-49288049)
chr4 (312-368)||(47464116-47464173)
chr4 (300-391)||(30879162-30879254)
chr4 (312-348)||(43352347-43352383)
[»] chr3 (1 HSPs)
chr3 (321-368)||(51532921-51532969)
[»] chr1 (4 HSPs)
chr1 (323-390)||(1379007-1379075)
chr1 (312-368)||(23734249-23734306)
chr1 (312-368)||(23741441-23741498)
chr1 (309-365)||(52135261-52135318)
[»] chr6 (1 HSPs)
chr6 (312-390)||(21148519-21148598)


Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 150 - 473
Target Start/End: Complemental strand, 45047145 - 45046824
Alignment:
Q  150 gtttggatgttgggctactaattttgtgataataatataactacgttattatagactgccannnnnnnattctccacagtggcacaatattttgtttttg 249  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  45047145 gtttggatgttggactactaattttgtgataataatataactacgttattatagactgccagttttttattctccacagtggcacaatattttgtttttg 45047046  T
Q  250 aaagaatagtgctacaannnnnnnnnaaagctctgtattacaattctttatttgaaagttcagtatctgattcaagaaccgactaatctgaggagaccat 349  Q
    |||||||||||||||||         ||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  45047045 aaagaatagtgctacaatttttttt-aaagctcagtattacaattctttatttaaaagttcattatctgattcaagaaccgactaatctgaggagaccat 45046947  T
Q  350 ctcaccgtccacttgcgggatcctgtttaaaatcagagcaaagttcagtgtagacttgtctaccgaaattatagttggacaatatttaatttccctttcg 449  Q
    |||||||||||||||| |||||||||| |||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  45046946 ctcaccgtccacttgcaggatcctgtt-aaaatcagagcaaagttcggtgtagatttatctaccgaaattatagttggacaatatttaatttccctttcg 45046848  T
Q  450 actaacatatcaaatggtattcat 473  Q
    ||||||||||||||||||||||||    
T  45046847 actaacatatcaaatggtattcat 45046824  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 364
Target Start/End: Complemental strand, 19421424 - 19421371
Alignment:
Q  312 gtatctgattcaagaaccgactaatctgaggagacc-atctcaccgtccacttg 364  Q
    |||||||||||||||| ||||||||| ||||||||| ||| ||||| |||||||    
T  19421424 gtatctgattcaagaatcgactaatccgaggagaccaatcccaccgcccacttg 19421371  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 390
Target Start/End: Complemental strand, 41314169 - 41314101
Alignment:
Q  323 aagaaccgactaatctgaggagacca-tctcaccgtccacttgcgggatcctgtttaaaatcagagcaa 390  Q
    ||||| ||| |||||||||| ||||| || ||||||||||||||||||||| ||||||| |||||||||    
T  41314169 aagaatcgattaatctgaggggaccaatcccaccgtccacttgcgggatcccgtttaaagtcagagcaa 41314101  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 365
Target Start/End: Original strand, 6006898 - 6006952
Alignment:
Q  312 gtatctgattcaagaaccgactaatctgaggagacc-atctcaccgtccacttgc 365  Q
    |||||||||||||| | ||||||||||||||||||| ||| ||||||||||||||    
T  6006898 gtatctgattcaaggatcgactaatctgaggagaccaatcacaccgtccacttgc 6006952  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 368
Target Start/End: Complemental strand, 31778220 - 31778163
Alignment:
Q  312 gtatctgattcaagaaccgactaatctgaggagacca-tctcaccgtccacttgcggg 368  Q
    ||||| ||| ||||||| ||||||||||||  ||||| ||||||||||||||||||||    
T  31778220 gtatccgatccaagaactgactaatctgagaggaccaatctcaccgtccacttgcggg 31778163  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 369
Target Start/End: Original strand, 6714313 - 6714361
Alignment:
Q  322 caagaaccgactaatctgaggagacca-tctcaccgtccacttgcggga 369  Q
    |||||| |||||||| ||||| ||||| |||||||||||||||||||||    
T  6714313 caagaatcgactaatttgaggggaccaatctcaccgtccacttgcggga 6714361  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 390
Target Start/End: Original strand, 7085618 - 7085714
Alignment:
Q  296 tttatttgaaagttcagtatctgattcaagaaccgactaatctgaggagacc-atctcaccgtccacttgc-gggatcctgtttaaaatcagagcaa 390  Q
    |||||||||||  || ||||| |||||||||| ||||||||| |||| |||| ||| ||||| |||||||| |||| || ||||||| |||||||||    
T  7085618 tttatttgaaaactcggtatccgattcaagaatcgactaatccgaggggaccaatcccaccgcccacttgcggggaccccgtttaaagtcagagcaa 7085714  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 365
Target Start/End: Original strand, 24158174 - 24158228
Alignment:
Q  312 gtatctgattcaagaaccgactaatctgaggagacc-atctcaccgtccacttgc 365  Q
    ||||| |||||||| |||||||||||||||| |||| ||||||||| ||||||||    
T  24158174 gtatccgattcaaggaccgactaatctgaggggaccaatctcaccgcccacttgc 24158228  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 368
Target Start/End: Original strand, 21042582 - 21042639
Alignment:
Q  312 gtatctgattcaagaaccgactaatctgaggagacc-atctcaccgtccacttgcggg 368  Q
    |||| |||||||||||| ||||||| ||||| |||| || ||||||||||||||||||    
T  21042582 gtatttgattcaagaactgactaatttgaggggaccaatttcaccgtccacttgcggg 21042639  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 368
Target Start/End: Original strand, 21236354 - 21236427
Alignment:
Q  296 tttatttgaaagttcagtatctgattcaagaaccgactaatctgaggagac-catctcaccgtccacttgcggg 368  Q
    |||||||||||  || ||||| |||||||||| |||||||||||||| |||  ||| ||||| |||||||||||    
T  21236354 tttatttgaaaactcggtatccgattcaagaatcgactaatctgaggggactaatcccaccgcccacttgcggg 21236427  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 380
Target Start/End: Complemental strand, 49288049 - 49287977
Alignment:
Q  309 tcagtatctgattcaagaaccgactaatctgaggagacc-atctcaccgtccacttgcgggatcctgtttaaa 380  Q
    |||||||||||| |||||| ||||||||| |||| |||| |||||| || |||||||||||| || |||||||    
T  49288049 tcagtatctgatccaagaatcgactaatccgaggggaccaatctcagcgcccacttgcgggagcccgtttaaa 49287977  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 368
Target Start/End: Original strand, 47464116 - 47464173
Alignment:
Q  312 gtatctgattcaagaaccgactaatctgaggagacc-atctcaccgtccacttgcggg 368  Q
    |||||||||||||| |||||||||| | |||||||| ||  |||||||||||||||||    
T  47464116 gtatctgattcaaggaccgactaatttaaggagaccaattccaccgtccacttgcggg 47464173  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 391
Target Start/End: Original strand, 30879162 - 30879254
Alignment:
Q  300 tttgaaagttcagtatctgattcaagaaccgactaatctgaggagacca-tctcaccgtccacttgcgggatcctgtttaaaatcagagcaaa 391  Q
    ||||||| ||| ||||||||| |||||| ||| ||||||||||  |||| || |||||||||||||| ||| ||  ||||||  |||||||||    
T  30879162 tttgaaaattcggtatctgatccaagaatcgattaatctgagggaaccaatcccaccgtccacttgcaggaccccctttaaagccagagcaaa 30879254  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 348
Target Start/End: Original strand, 43352347 - 43352383
Alignment:
Q  312 gtatctgattcaagaaccgactaatctgaggagacca 348  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  43352347 gtatctgattcaagaatcgattaatctgaggagacca 43352383  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 368
Target Start/End: Complemental strand, 51532969 - 51532921
Alignment:
Q  321 tcaagaaccgactaatctgaggagacc-atctcaccgtccacttgcggg 368  Q
    |||||||||||||||||||||| |||| ||| |||||||||||||||||    
T  51532969 tcaagaaccgactaatctgaggggaccaatcccaccgtccacttgcggg 51532921  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 390
Target Start/End: Complemental strand, 1379075 - 1379007
Alignment:
Q  323 aagaaccgactaatctgaggagacca-tctcaccgtccacttgcgggatcctgtttaaaatcagagcaa 390  Q
    ||||| |||||||||||||| ||||| ||||||||||||||||||||  || |||||||  ||||||||    
T  1379075 aagaatcgactaatctgaggggaccaatctcaccgtccacttgcgggggcccgtttaaagccagagcaa 1379007  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 368
Target Start/End: Complemental strand, 23734306 - 23734249
Alignment:
Q  312 gtatctgattcaagaaccgactaatctgaggagacc-atctcaccgtccacttgcggg 368  Q
    ||||| |||||||||| |||||||||||||| |||| || |||||| |||||||||||    
T  23734306 gtatccgattcaagaatcgactaatctgaggggaccaatttcaccgcccacttgcggg 23734249  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 368
Target Start/End: Complemental strand, 23741498 - 23741441
Alignment:
Q  312 gtatctgattcaagaaccgactaatctgaggagacc-atctcaccgtccacttgcggg 368  Q
    ||||| |||||||||| |||||||||||||| |||| || |||||| |||||||||||    
T  23741498 gtatccgattcaagaatcgactaatctgaggggaccaatttcaccgcccacttgcggg 23741441  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 365
Target Start/End: Complemental strand, 52135318 - 52135261
Alignment:
Q  309 tcagtatctgattcaagaaccgactaatctgaggagacc-atctcaccgtccacttgc 365  Q
    |||||||| ||| ||||||||||||||| ||||| |||| ||| ||||||||||||||    
T  52135318 tcagtatccgatccaagaaccgactaatatgaggggaccaatcccaccgtccacttgc 52135261  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 390
Target Start/End: Original strand, 21148519 - 21148598
Alignment:
Q  312 gtatctgattcaagaaccgactaatctgaggagacca-tctcaccgtccacttgcgggatcctgtttaaaatcagagcaa 390  Q
    ||||| |||||||||| ||||||||| |||| ||||| || ||||| |||||||||||  || ||||||| |||||||||    
T  21148519 gtatccgattcaagaatcgactaatccgaggggaccaatcccaccgcccacttgcggggccccgtttaaagtcagagcaa 21148598  T

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