View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_low_2 (Length: 701)
Name: NF12598_low_2
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 6 - 389
Target Start/End: Original strand, 23666870 - 23667254
Alignment:
| Q |
6 |
agcagcacagacaaaagctatctctcctctccgtgtctttgtactacgtaggcagtaaatagttacctcagattccaaaaatgtcggtgtgtgtgggtct |
105 |
Q |
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| T |
23666870 |
agcaacacagacaaaagctatctctcctctccgtgtctttgtactacgtaggcagtaaatagttacctcagattccaaaaatgtcggtgtgtgtgggtct |
23666969 |
T |
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| Q |
106 |
caaagaagaaacatatcgaaagataaagcaaaaagaagcaagtaaataacacagcagtgtgggctaattttgcagaagctataatatatggtacgaaaat |
205 |
Q |
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| T |
23666970 |
caaagaagaaacatatcgaaagataaagcaaaaagaagcaagtaaataacacagcagtgtgggctaattttgcagaagctataatatatggtacgaaaat |
23667069 |
T |
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| Q |
206 |
gaggctcagaaattcatgcatgttctactttcatggatatgtgaactgttcaactgttaca-acccctttcaacagtgttttttaatcataatcgttcaa |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
23667070 |
gaggctcagaaattcatgcatgttctactttcatggatatgtgaactgttcaactgttacatacccctttcaacagtgttttttaatcataatcgttcaa |
23667169 |
T |
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| Q |
305 |
ccttcaacctctatagttttgtattaatccataatatgtagtatcaaaattataaggacgttattattcctttgtttcatttgca |
389 |
Q |
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| T |
23667170 |
ccttcaacctctatagttttgtattaatccataatatggagtatcaaaattataaggacgttattattcctttgtttcatttgca |
23667254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 449 - 680
Target Start/End: Original strand, 23667314 - 23667545
Alignment:
| Q |
449 |
caagagtggggacctatacaaccattaatgccagagaccgttaccaactttatagacactggttcagcagctagctggaataaatgtattcttttttcct |
548 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23667314 |
caagagtggggacctatacaaccattaatgccagagaccgttaccaactttatagacactggttcagcagctagctggaataaatgtattcttttttcct |
23667413 |
T |
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| Q |
549 |
aaccagcatgcatgatgcacctatcaataggagttaactatattgatattgaaacaaaagcataaactatgtgccacgagatgcttgtggattacctaaa |
648 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23667414 |
aaccagcatgcatgatgcacctatcaataggagttaactatattgatattgaaacaaaagcataaactatgtgccacgagatgcttgtggattacctaaa |
23667513 |
T |
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| Q |
649 |
tttctaactagcatttcatatcatgcttgctt |
680 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
23667514 |
tttctaactagcatttcatatcatgcttgctt |
23667545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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