View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_low_20 (Length: 483)
Name: NF12598_low_20
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 11 - 466
Target Start/End: Complemental strand, 6899117 - 6898662
Alignment:
| Q |
11 |
cagagaccacaaacataccaaacaaacacacccaatctctcatagcttccttatacctcctagcgtcaccttcgccagcaccatagtatgtcttccctcc |
110 |
Q |
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| T |
6899117 |
cagagaccacaaacataccaaacaaacacacccaatctctcatagcttccttatacctcctagcttcaccttcaccagcaccatagtatgtcttccctcc |
6899018 |
T |
|
| Q |
111 |
caccattctcagagcaatattttgtgtcaaatcaccaaaccactgcttcatatcaaccaaaacaccttcttttggacaaccctttatcgaccataaccta |
210 |
Q |
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| T |
6899017 |
caccattctcagagcaatattttgtgtcaaatcaccaaaccactgcttcatatcaaccaaaacaccttcttttggacaaccctttatcgaccataaccta |
6898918 |
T |
|
| Q |
211 |
taaagctcacttactgcagcttctatctcagatactcttgtgtccttcaacagttcgagtcggtgatttgaaagaagctcaagtgtagctaacttcctta |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
6898917 |
taaagctcacttactgcagcttctatctcagatactcttgtgtccttcaacagttcgagtcggtgattcgaaagaagctcaagtgtagctaatttcctta |
6898818 |
T |
|
| Q |
311 |
tctcacgccaataaggaccataaggagtgaaaccaaacatagcatagttgtaacccattaattttgaggctgcaactaagggtctagtggaaaatgtttt |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6898817 |
tctcacgccaataaggaccataaggagtgaaaccaaacatagcatagttgtaacccattaattttgaggctgcaactaagggtctagtggaaaatgtttt |
6898718 |
T |
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| Q |
411 |
gtcgtggagagtaaaacattctttggccatttcactgctacttagtacaagaactt |
466 |
Q |
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| T |
6898717 |
gtcgtggagagtaaaacattctttggccatttcactgctacttagtacaagaactt |
6898662 |
T |
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