View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12598_low_22 (Length: 471)

Name: NF12598_low_22
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12598_low_22
NF12598_low_22
[»] chr6 (12 HSPs)
chr6 (1-453)||(32093496-32093949)
chr6 (15-163)||(32107670-32107817)
chr6 (246-341)||(32107968-32108063)
chr6 (246-341)||(32077664-32077759)
chr6 (1-107)||(32077513-32077619)
chr6 (337-453)||(8997396-8997512)
chr6 (366-453)||(9006608-9006695)
chr6 (378-453)||(17945708-17945783)
chr6 (289-335)||(32122605-32122651)
chr6 (369-453)||(27748324-27748408)
chr6 (82-173)||(32122402-32122492)
chr6 (369-437)||(11376378-11376446)
[»] chr2 (1 HSPs)
chr2 (337-453)||(24991603-24991719)
[»] scaffold0096 (1 HSPs)
scaffold0096 (337-453)||(51565-51681)
[»] scaffold0028 (1 HSPs)
scaffold0028 (337-453)||(84372-84488)
[»] chr7 (1 HSPs)
chr7 (337-453)||(609282-609398)
[»] chr5 (3 HSPs)
chr5 (337-453)||(725818-725934)
chr5 (366-453)||(15328097-15328184)
chr5 (366-453)||(18710575-18710662)
[»] chr4 (2 HSPs)
chr4 (337-453)||(114698-114814)
chr4 (366-453)||(14934884-14934971)
[»] chr3 (1 HSPs)
chr3 (337-453)||(19687347-19687463)
[»] scaffold0500 (1 HSPs)
scaffold0500 (337-437)||(6403-6503)
[»] chr8 (1 HSPs)
chr8 (366-453)||(45496548-45496635)


Alignment Details
Target: chr6 (Bit Score: 319; Significance: 1e-180; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 453
Target Start/End: Original strand, 32093496 - 32093949
Alignment:
Q  1 agaagaaaatattttttatggaactcacctcctcttagatattgacaatgtaactcaaagccttttagacctgcaggaatgaatacatgacacaaaatct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  32093496 agaagaaaatattttttatggaactcacctcctcttagatattgacaatgtaactcaaagccttttagacctgcaggaataaatacatgacacaaaatct 32093595  T
Q  101 ataagaaatggatttcacacacatacatatttacaaagggaaaacaaatataaa----aatgtatttaccaactttggaattttcattaagagtaacaag 196  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||| |||    
T  32093596 ataaggaatggatttcacacacatacatatttacaaagggaaaacaaatataaaaattaatgtatttaccaactttggaattttcattaagagtaataag 32093695  T
Q  197 aaggaaacttttacnnnnnnnnactcaatttttaaaatnnnnnnnnnnntccaaattttattttgttgaccaactttaattatattttatagattctaaa 296  Q
    ||||||||||||||        ||||||||||| |||            |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32093696 aaggaaacttttacttttttttactcaattttttaaa---aaaaaaaaatccaaattttattttgttgaccaactttaattatattttatagattctaaa 32093792  T
Q  297 taaatcatttgtaaagttaaaaaggtaaataaattaagtgaaaatatgggcacccaaggtattaaaaatttctactgcaaaaatgtctcataatagtcaa 396  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  32093793 taaatcatttgtaaacttaaaaaggtaaataaattaagtgaaaatataggtacccaaggtattaaaaatttctagtgcaaaaatgtctcataatagtcaa 32093892  T
Q  397 gaaaaggcccctgtacttagatagtggatgctcaagacatacgacttgagataaaca 453  Q
    |||||| |||  |||||| || |||||||||||||||||||||||| ||||||||||    
T  32093893 gaaaagaccctagtacttggacagtggatgctcaagacatacgactggagataaaca 32093949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 15 - 163
Target Start/End: Original strand, 32107670 - 32107817
Alignment:
Q  15 tttatggaactcacctcctcttagatattgacaatgtaactcaaagccttttagacctgcaggaatgaatacatgacacaaaatctataagaaatggatt 114  Q
    |||||||||||||||||||||||||| || |||||| |||| ||| | |||||||||||||||| ||||||||||||||||||| ||||||||||||| |    
T  32107670 tttatggaactcacctcctcttagattttcacaatgcaacttaaa-ctttttagacctgcaggactgaatacatgacacaaaatgtataagaaatggaat 32107768  T
Q  115 tcacacacatacatatttacaaagggaaaacaaatataaaaatgtattt 163  Q
    ||||||||||| ||||||||| || ||||||||||||||||||||||||    
T  32107769 tcacacacatatatatttacatagagaaaacaaatataaaaatgtattt 32107817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 246 - 341
Target Start/End: Original strand, 32107968 - 32108063
Alignment:
Q  246 tccaaattttattttgttgaccaactttaattatattttatagattctaaataaatcatttgtaaagttaaaaaggtaaataaattaagtgaaaat 341  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  32107968 tccaaattttattttgttgaccaactttaattatattatatagattcaaaataaatcatttgtaaagttaaaagggtaaataaattaagtgaaaat 32108063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 246 - 341
Target Start/End: Original strand, 32077664 - 32077759
Alignment:
Q  246 tccaaattttattttgttgaccaactttaattatattttatagattctaaataaatcatttgtaaagttaaaaaggtaaataaattaagtgaaaat 341  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  32077664 tccaaattttattttgttgaccaactttaattatattctatagattcaaaacaaatcatttgtaaagttaaaaaggtaaataaattaagtgcaaat 32077759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 32077513 - 32077619
Alignment:
Q  1 agaagaaaatattt-tttatggaactcacctcctcttagatattgacaatgtaactcaaagccttttagacctgcaggaatgaatacatgacacaaaatc 99  Q
    |||||||||||||  |||||||||||||||||||||||||| || ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||     
T  32077513 agaagaaaatattaatttatggaactcacctcctcttagattttcacaatgtaacttaaa-ccttttagacctgcaggaatgaatacatgacacaaaatg 32077611  T
Q  100 tataagaa 107  Q
    ||||||||    
T  32077612 tataagaa 32077619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 337 - 453
Target Start/End: Original strand, 8997396 - 8997512
Alignment:
Q  337 aaaatatgggcacccaaggtattaaaaatttctactgcaaaaatgtctcataatagtcaagaaaaggcccctgtacttagatagtggatgctcaagacat 436  Q
    |||||||||| |||||| | ||||  || ||||||||||  |||||||||||| ||||||||||| ||||  |||||| || ||||||||||||||||||    
T  8997396 aaaatatgggtacccaaagcattactaacttctactgcaggaatgtctcataacagtcaagaaaaagccctggtacttggacagtggatgctcaagacat 8997495  T
Q  437 acgacttgagataaaca 453  Q
    | |||| ||||||||||    
T  8997496 atgactggagataaaca 8997512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 366 - 453
Target Start/End: Original strand, 9006608 - 9006695
Alignment:
Q  366 ttctactgcaaaaatgtctcataatagtcaagaaaaggcccctgtacttagatagtggatgctcaagacatacgacttgagataaaca 453  Q
    ||||||||||  |||||||||||| ||||||||||| ||||  |||||| || ||||||||||||||||||| |||| ||||||||||    
T  9006608 ttctactgcaggaatgtctcataacagtcaagaaaaagccctggtacttggacagtggatgctcaagacatatgactggagataaaca 9006695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 378 - 453
Target Start/End: Original strand, 17945708 - 17945783
Alignment:
Q  378 aatgtctcataatagtcaagaaaaggcccctgtacttagatagtggatgctcaagacatacgacttgagataaaca 453  Q
    |||||||||| ||||||||||||||||||  |||||| || | ||||||||||||| ||| |||| ||||||||||    
T  17945708 aatgtctcatgatagtcaagaaaaggccctagtacttggacattggatgctcaagatatatgactagagataaaca 17945783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 335
Target Start/End: Original strand, 32122605 - 32122651
Alignment:
Q  289 attctaaataaatcatttgtaaagttaaaaaggtaaataaattaagt 335  Q
    |||| |||||||||||||  |||||||||||||||||||||||||||    
T  32122605 attcaaaataaatcattttgaaagttaaaaaggtaaataaattaagt 32122651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 453
Target Start/End: Complemental strand, 27748408 - 27748324
Alignment:
Q  369 tactgcaaaaatgtctcataatagtcaagaaaaggcccctgtacttagatagtggatgctcaagacatacgacttgagataaaca 453  Q
    |||||||  |||||||||| | ||||||||||| |||   |||||| || ||||||||||||||||||| |||| |||| |||||    
T  27748408 tactgcaggaatgtctcatgacagtcaagaaaaagccttggtacttggacagtggatgctcaagacatatgactggagacaaaca 27748324  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 173
Target Start/End: Original strand, 32122402 - 32122492
Alignment:
Q  82 aatacatgacacaaaatctataagaaatggatttcacacacatacatatttacaaagggaaaacaaatataaaaatgtatttaccaactttg 173  Q
    ||||||||| | |||||||||  |||||||| ||||| ||||| |||||||||   ||||||| | ||| ||| ||||||||||||||||||    
T  32122402 aatacatgaaataaaatctatttgaaatggaattcac-cacatccatatttacggtgggaaaaaagatagaaacatgtatttaccaactttg 32122492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 11376378 - 11376446
Alignment:
Q  369 tactgcaaaaatgtctcataatagtcaagaaaaggcccctgtacttagatagtggatgctcaagacata 437  Q
    |||||||  |||||||||||| ||||||||||| |||   |||||| || | |||||||||||||||||    
T  11376378 tactgcaggaatgtctcataacagtcaagaaaaagccttggtacttggacaatggatgctcaagacata 11376446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 337 - 453
Target Start/End: Original strand, 24991603 - 24991719
Alignment:
Q  337 aaaatatgggcacccaaggtattaaaaatttctactgcaaaaatgtctcataatagtcaagaaaaggcccctgtacttagatagtggatgctcaagacat 436  Q
    |||||||||| |||||| ||||||  |||||||||||||  |||||||||||| ||||||||||| ||||  |||||| || ||||||||||||||||||    
T  24991603 aaaatatgggtacccaatgtattactaatttctactgcaggaatgtctcataacagtcaagaaaaagccctggtacttggacagtggatgctcaagacat 24991702  T
Q  437 acgacttgagataaaca 453  Q
    | |||| ||||||||||    
T  24991703 atgactggagataaaca 24991719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 337 - 453
Target Start/End: Original strand, 51565 - 51681
Alignment:
Q  337 aaaatatgggcacccaaggtattaaaaatttctactgcaaaaatgtctcataatagtcaagaaaaggcccctgtacttagatagtggatgctcaagacat 436  Q
    |||||||||| |||||| | ||||  || ||||||||||  |||||||||||| ||||||||||| ||||  |||||| || ||||||||||||||||||    
T  51565 aaaatatgggtacccaaagcattactaacttctactgcaggaatgtctcataacagtcaagaaaaagccctggtacttggacagtggatgctcaagacat 51664  T
Q  437 acgacttgagataaaca 453  Q
    | |||| ||||||||||    
T  51665 atgactggagataaaca 51681  T

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Target: scaffold0028 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 337 - 453
Target Start/End: Original strand, 84372 - 84488
Alignment:
Q  337 aaaatatgggcacccaaggtattaaaaatttctactgcaaaaatgtctcataatagtcaagaaaaggcccctgtacttagatagtggatgctcaagacat 436  Q
    |||||||||| |||||| | ||||  || ||||||||||  |||||||||||| ||||||||||| ||||  |||||| || ||||||||||||||||||    
T  84372 aaaatatgggtacccaaagcattactaacttctactgcaggaatgtctcataacagtcaagaaaaagccctggtacttggacagtggatgctcaagacat 84471  T
Q  437 acgacttgagataaaca 453  Q
    | |||| ||||||||||    
T  84472 atgactggagataaaca 84488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 337 - 453
Target Start/End: Original strand, 609282 - 609398
Alignment:
Q  337 aaaatatgggcacccaaggtattaaaaatttctactgcaaaaatgtctcataatagtcaagaaaaggcccctgtacttagatagtggatgctcaagacat 436  Q
    |||||||||| |||||| | ||||  || ||||||||||  |||||||||||| ||||||||||| ||||  |||||| || ||||||||||||||||||    
T  609282 aaaatatgggtacccaaagcattactaacttctactgcaggaatgtctcataacagtcaagaaaaagccctggtacttggacagtggatgctcaagacat 609381  T
Q  437 acgacttgagataaaca 453  Q
    | |||| ||||||||||    
T  609382 atgactggagataaaca 609398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 337 - 453
Target Start/End: Complemental strand, 725934 - 725818
Alignment:
Q  337 aaaatatgggcacccaaggtattaaaaatttctactgcaaaaatgtctcataatagtcaagaaaaggcccctgtacttagatagtggatgctcaagacat 436  Q
    |||||||||| |||||| | ||||  || ||||||||||  |||||||||||| ||||||||||| ||||  |||||| || ||||||||||||||||||    
T  725934 aaaatatgggtacccaaagcattactaacttctactgcaggaatgtctcataacagtcaagaaaaagccctggtacttggacagtggatgctcaagacat 725835  T
Q  437 acgacttgagataaaca 453  Q
    | |||| ||||||||||    
T  725834 atgactggagataaaca 725818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 453
Target Start/End: Complemental strand, 15328184 - 15328097
Alignment:
Q  366 ttctactgcaaaaatgtctcataatagtcaagaaaaggcccctgtacttagatagtggatgctcaagacatacgacttgagataaaca 453  Q
    ||||||||||  |||| ||||||| ||||||||||| |||   |||||| || ||||||||||||||||||| |||| ||||||||||    
T  15328184 ttctactgcaggaatgcctcataacagtcaagaaaaagccttggtacttggacagtggatgctcaagacatatgactggagataaaca 15328097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 453
Target Start/End: Original strand, 18710575 - 18710662
Alignment:
Q  366 ttctactgcaaaaatgtctcataatagtcaagaaaaggcccctgtacttagatagtggatgctcaagacatacgacttgagataaaca 453  Q
    ||||||||||  |||| ||||||| ||||||||||| |||   |||||| || ||||||||||||||||||| |||| ||||||||||    
T  18710575 ttctactgcaggaatgcctcataacagtcaagaaaaagccttggtacttggacagtggatgctcaagacatatgactggagataaaca 18710662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 337 - 453
Target Start/End: Original strand, 114698 - 114814
Alignment:
Q  337 aaaatatgggcacccaaggtattaaaaatttctactgcaaaaatgtctcataatagtcaagaaaaggcccctgtacttagatagtggatgctcaagacat 436  Q
    |||||||||| |||||| | ||||  || ||||||||||  |||||||||||| ||||||||||| ||||  |||||| || ||||||||||||||||||    
T  114698 aaaatatgggtacccaaagcattactaacttctactgcaggaatgtctcataacagtcaagaaaaagccctggtacttggacagtggatgctcaagacat 114797  T
Q  437 acgacttgagataaaca 453  Q
    | |||| ||||||||||    
T  114798 atgactggagataaaca 114814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 453
Target Start/End: Original strand, 14934884 - 14934971
Alignment:
Q  366 ttctactgcaaaaatgtctcataatagtcaagaaaaggcccctgtacttagatagtggatgctcaagacatacgacttgagataaaca 453  Q
    ||||||||||  |||| ||||||| ||||||||||| |||   |||||| || ||||||||||||||||||| |||| ||||||||||    
T  14934884 ttctactgcaggaatgcctcataacagtcaagaaaaagccttggtacttggacagtggatgctcaagacatatgactggagataaaca 14934971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 337 - 453
Target Start/End: Original strand, 19687347 - 19687463
Alignment:
Q  337 aaaatatgggcacccaaggtattaaaaatttctactgcaaaaatgtctcataatagtcaagaaaaggcccctgtacttagatagtggatgctcaagacat 436  Q
    |||||||||| |||||| | ||||  || ||||||||||  |||||||||||| ||||||||||| ||||  |||||| || ||||||||||||||||||    
T  19687347 aaaatatgggtacccaaagcattactaacttctactgcaggaatgtctcataacagtcaagaaaaagccctggtacttggacagtggatgctcaagacat 19687446  T
Q  437 acgacttgagataaaca 453  Q
    | |||| ||||||||||    
T  19687447 atgactggagataaaca 19687463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0500 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 337 - 437
Target Start/End: Original strand, 6403 - 6503
Alignment:
Q  337 aaaatatgggcacccaaggtattaaaaatttctactgcaaaaatgtctcataatagtcaagaaaaggcccctgtacttagatagtggatgctcaagacat 436  Q
    |||||||||| |||||||||||||  || ||||||||||  |||||||||||| | ||||||||| ||||  ||||||  | ||||||||||||||||||    
T  6403 aaaatatgggtacccaaggtattactaacttctactgcaggaatgtctcataacaatcaagaaaaagccctggtacttgaacagtggatgctcaagacat 6502  T
Q  437 a 437  Q
    |    
T  6503 a 6503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 453
Target Start/End: Complemental strand, 45496635 - 45496548
Alignment:
Q  366 ttctactgcaaaaatgtctcataatagtcaagaaaaggcccctgtacttagatagtggatgctcaagacatacgacttgagataaaca 453  Q
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T  45496635 ttctactgcaggaatgcctcataacagtcaagaaaaagccttggtacttggacagtggatgctcaagacatatgactggagataaaca 45496548  T

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