View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12598_low_24 (Length: 455)
Name: NF12598_low_24
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_24 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 19 - 445
Target Start/End: Original strand, 31274704 - 31275131
Alignment:
| Q |
19 |
atgttttgtccttattttctttaaaggtcatcccatggtgcaagaaattatcaattccatcaaagtgaagtggtccttcataccccatcaaagcatattg |
118 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31274704 |
atgttttgtccttatttcctttaaaggtcatcccatggtgcaagaaattatcaattccatcaatgtgaagtggtccttcataccccatcaaagcatattg |
31274803 |
T |
|
| Q |
119 |
aatagctgtccaaat-accaaataggaaatggaaatcatgtacaaaaataagtgcctaaagattctcatgttgcttgaaatagaaaacacaagacaaatc |
217 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31274804 |
aatagctgtccaaaacaccaaataggaaatggaaatcatgtacaaaaataagtgcctaaagattctcatgttgcttgaaatagaaaacacaagacaaatc |
31274903 |
T |
|
| Q |
218 |
atgtctacattgtaaaatatcaatactaaaaaacaatcttttgttggcagcctattcgtagaaattggactctctaattcttagaggttaggatattttt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31274904 |
atgtctacattgtaaaatatcaatactaaaaaacaatcttttgttggcagcctattcgtagaaattggactctctaattcttagaggttaggatattttt |
31275003 |
T |
|
| Q |
318 |
tggcagttagtttctaatattctgcagcaacttgtatttttaattgttcttgtaacaaactctgcaagaaattattcccagaaaattctgatgataatac |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
31275004 |
tggcagttagtttctaatattctgcagcaacttgtatttttaattgttcttgtaacaaactctgcaagaaattattcccagaaaattgtgatgataatac |
31275103 |
T |
|
| Q |
418 |
aaaaattgttttcactgcattgcctttg |
445 |
Q |
| |
|
|||||||||||||||| ||||||||||| |
|
|
| T |
31275104 |
aaaaattgttttcactccattgcctttg |
31275131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University