View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_low_25 (Length: 452)
Name: NF12598_low_25
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 195 - 444
Target Start/End: Complemental strand, 8021704 - 8021453
Alignment:
| Q |
195 |
tacacttcattgtagacttgaagctctttgaagttagttagaagctaattttagtttttaattggattatgtaagannnnnnnncgaatcccttgagttt |
294 |
Q |
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| T |
8021704 |
tacacttcattgtagacttgaagctctttgaagttagttagaagctaattttagtttttaattggattatgtaagattttttttcgaatcccttgagttt |
8021605 |
T |
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| Q |
295 |
ctaattgcattacgtaagatttcttttttcttgtgatgcattatataagattctaacaacatgtgtaaccaaaaaatatcataatgt--nnnnnnnnnga |
392 |
Q |
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| T |
8021604 |
ctaattgcattacgtaagatttcttttttcttgtgatgcattatataagattctaacaacatgtgtaaccaaaaaatatcataatgtaacaaaaaaaaga |
8021505 |
T |
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| Q |
393 |
ttgtaataacatgtgcaataaaagtatatttggtaaccctcatctagtctct |
444 |
Q |
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| T |
8021504 |
ttgtaataacatgtgcaataaaagtatattcggtaaccctcatctagtctct |
8021453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 16 - 153
Target Start/End: Complemental strand, 8021883 - 8021745
Alignment:
| Q |
16 |
aagtatcactaatcaaaggacggtgggaacaaacattaaa-tgagtccacttataatataaacgtccgtaaaaatttaaaaatatcttgatcnnnnnnnt |
114 |
Q |
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| T |
8021883 |
aagtatcactaatcaaaggacggtgggaacaaatattaaaatgagtccacttataatataaacgtccgtaaaaatttaataatatcttgatcaaaaatat |
8021784 |
T |
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| Q |
115 |
atatttattatataaacgagtacgtattccttcttgacc |
153 |
Q |
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| T |
8021783 |
atatttattatataaacgagtacgtattccttcttgacc |
8021745 |
T |
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