View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_low_26 (Length: 451)
Name: NF12598_low_26
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 87 - 368
Target Start/End: Complemental strand, 48569421 - 48569141
Alignment:
| Q |
87 |
aattcataatcaattttcacacagaaaacagaagtattggaaaggctgtggtacaaccaaagaaaggaaatgccttgaaggtatttc-agaagatgtcaa |
185 |
Q |
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| T |
48569421 |
aattcataatcaattttcaca--gaaaacagaagtattggaaaggctgtggtacaaccaaagaaaggaaatgccttgaaggtatttccagaagatgtcaa |
48569324 |
T |
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| Q |
186 |
ccttccaagagtagaccaaagtaccataattttccatgaatataccttaaaagatgaggatcctgaatggtcttcattaggctgaacaaccatatgggcc |
285 |
Q |
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| T |
48569323 |
ccttccaagagtagaccaaagtaccataattttctatgaatataccttaaaagatgaggatcctgaatggtcttcattaggctgaacaaccatatgggcc |
48569224 |
T |
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| Q |
286 |
attggagcatttccaacaaaataggtattggagagatctcctatgactgatttcaatgcagactcagcacactgcaagatttc |
368 |
Q |
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| T |
48569223 |
attggagcatttccaaccaaaaaggtattggagagatctcctatgactgatttcaatgcagactcagcacactgcaagatttc |
48569141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 48569453 - 48569420
Alignment:
| Q |
29 |
gaagaatttctatcggaagatttcagcaaaggaa |
62 |
Q |
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| T |
48569453 |
gaagaatttatatcggaagatttcagcaaaggaa |
48569420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 9e-34; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 176 - 362
Target Start/End: Original strand, 10821749 - 10821937
Alignment:
| Q |
176 |
aagatgtcaaccttccaagagtagaccaaagtaccataa--ttttccatgaatataccttaaaagatgaggatcctgaatggtcttcattaggctgaaca |
273 |
Q |
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| T |
10821749 |
aagatgtcaaccttccaatagtagattgaagtaccacaaaatttcctttaaacataccttaaaagatgttgatcctgtctgctcttctttaggctgaaca |
10821848 |
T |
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| Q |
274 |
accatatgggccattggagcatttccaacaaaataggtattggagagatctcctatgactgatttcaatgcagactcagcacactgcaa |
362 |
Q |
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| T |
10821849 |
accgtatgggccatcggagcatttccgacaaaatatgtattcgaaagatctcctaagactgatttcaaggcagattctgcacactgcaa |
10821937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 227 - 362
Target Start/End: Complemental strand, 36145584 - 36145449
Alignment:
| Q |
227 |
ataccttaaaagatgaggatcctgaatggtcttcattaggctgaacaaccatatgggccattggagcatttccaacaaaataggtattggagagatctcc |
326 |
Q |
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| T |
36145584 |
ataccttaaaagatgttgatcctgtctgctcttctttaggctgaacaacaatatgggccatcggagcatttccgacaaaatatgtatttgaaagatctcc |
36145485 |
T |
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| Q |
327 |
tatgactgatttcaatgcagactcagcacactgcaa |
362 |
Q |
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| T |
36145484 |
caagactgatttcaaggcagattctgcacactgcaa |
36145449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 10821561 - 10821612
Alignment:
| Q |
29 |
gaagaatttctatcggaagatttcagcaaaggaaaaaatgagcaagtataat |
80 |
Q |
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| T |
10821561 |
gaagaatttctgacagaagatttaagcaaaggaaagaatgagcaagtataat |
10821612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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