View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12598_low_27 (Length: 449)
Name: NF12598_low_27
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_27 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 50 - 435
Target Start/End: Complemental strand, 36463252 - 36462867
Alignment:
| Q |
50 |
aggtacctatagctgtaggagtaagttcatatgaggctgtgcttttatacaaagggaaaaaagttatagcttccaagggagatcaaggaataaattggag |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36463252 |
aggtacctatagctgtaggagtaagttcatatgaggctgtgcttttatacaaagggaaaaaagttatagcttccaagggagatcaaggaataaattggag |
36463153 |
T |
|
| Q |
150 |
tgtgaagcagttaattctatattgttcatgtggcataattgctggcttaattggtggcttacttggtcttggtggaggatttatcttagcgccactcttc |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36463152 |
tgtgaagcagttaattctatattgttcatgcggcataattgctggcttaattggtggcttacttggtcttggtggaggatttatcttagcgccactcttc |
36463053 |
T |
|
| Q |
250 |
cttggacttggaatccctcctcaggtatctttattttatttcttctcttttccataatatacatatatatactaattaaatgagatttatgagagtatgt |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36463052 |
cttggacttggaatccctcctcaggtatctttattttatttcttctcttttccataatatacatatatatactaattaaatgagatttatgagagtatgt |
36462953 |
T |
|
| Q |
350 |
ttgcaattctgattcgataattttctttgaaggtatcaagtgctacatccacttttgcaatgacattttctgcatctatgtctgtg |
435 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36462952 |
ttgcaattctgattcgataattttctttgaaggtatcaagtgctacatccacttttgcaatgacattttctgcatctatgtctgtg |
36462867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 50 - 276
Target Start/End: Complemental strand, 36472402 - 36472176
Alignment:
| Q |
50 |
aggtacctatagctgtaggagtaagttcatatgaggctgtgcttttatacaaagggaaaaaagttatagcttccaagggagatcaaggaataaattggag |
149 |
Q |
| |
|
|||||||||||||| ||||||| ||| |||||||||| | |||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
36472402 |
aggtacctatagctataggagtgagtggatatgaggctatacttttatacaaaggaaaaagagttatagcttccaatggagatcaaggaataaattggag |
36472303 |
T |
|
| Q |
150 |
tgtgaagcagttaattctatattgttcatgtggcataattgctggcttaattggtggcttacttggtcttggtggaggatttatcttagcgccactcttc |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
36472302 |
tgtgaagcagttaattctatattgttcatgtggcataattgctggaataatcggtggcttgcttggtcttggtggaggatttatcttagggccacttttc |
36472203 |
T |
|
| Q |
250 |
cttggacttggaatccctcctcaggta |
276 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
36472202 |
attggacttggaatccctcctcaggta |
36472176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 368 - 435
Target Start/End: Complemental strand, 36472064 - 36471997
Alignment:
| Q |
368 |
aattttctttgaaggtatcaagtgctacatccacttttgcaatgacattttctgcatctatgtctgtg |
435 |
Q |
| |
|
|||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36472064 |
aattttctattaaggtggcaagtgctacatccacttttgcaatgacattttctgcatctatgtctgtg |
36471997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University