View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12598_low_28 (Length: 439)

Name: NF12598_low_28
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12598_low_28
NF12598_low_28
[»] scaffold0598 (1 HSPs)
scaffold0598 (17-385)||(6877-7243)
[»] chr4 (14 HSPs)
chr4 (337-386)||(26207364-26207414)
chr4 (337-386)||(22681578-22681628)
chr4 (337-385)||(48406386-48406435)
chr4 (337-386)||(25161881-25161932)
chr4 (337-386)||(28196349-28196400)
chr4 (337-386)||(28196773-28196824)
chr4 (337-386)||(32703650-32703701)
chr4 (337-386)||(56505696-56505747)
chr4 (337-386)||(3930480-3930530)
chr4 (337-386)||(23539844-23539893)
chr4 (337-386)||(48405965-48406015)
chr4 (337-383)||(9380744-9380792)
chr4 (347-386)||(26207746-26207786)
chr4 (399-427)||(39415483-39415511)
[»] chr1 (21 HSPs)
chr1 (337-386)||(9347551-9347601)
chr1 (337-388)||(1176720-1176772)
chr1 (337-386)||(44911028-44911079)
chr1 (337-386)||(17518602-17518652)
chr1 (337-386)||(20371353-20371403)
chr1 (337-386)||(27172119-27172169)
chr1 (337-382)||(49318170-49318216)
chr1 (337-374)||(19007738-19007775)
chr1 (337-385)||(20480613-20480662)
chr1 (337-386)||(8108993-8109044)
chr1 (337-386)||(9347129-9347180)
chr1 (337-386)||(32163043-32163094)
chr1 (337-386)||(39692000-39692051)
chr1 (337-386)||(47955309-47955360)
chr1 (337-386)||(50430081-50430132)
chr1 (337-386)||(13589659-13589709)
chr1 (337-386)||(20480171-20480221)
chr1 (337-375)||(49317755-49317793)
chr1 (337-386)||(50615621-50615671)
chr1 (337-386)||(50623449-50623499)
chr1 (337-383)||(46823846-46823894)
[»] chr3 (16 HSPs)
chr3 (337-385)||(8315083-8315132)
chr3 (337-386)||(42672981-42673031)
chr3 (337-387)||(20969018-20969070)
chr3 (337-386)||(47666335-47666386)
chr3 (337-386)||(48159900-48159951)
chr3 (337-386)||(48160333-48160384)
chr3 (337-383)||(53688306-53688353)
chr3 (337-386)||(1928434-1928484)
chr3 (337-386)||(3353131-3353181)
chr3 (337-386)||(22429596-22429646)
chr3 (337-386)||(24485460-24485510)
chr3 (337-386)||(26007185-26007235)
chr3 (337-386)||(40848524-40848574)
chr3 (337-386)||(42673296-42673346)
chr3 (337-386)||(47871122-47871172)
chr3 (341-384)||(3353553-3353597)
[»] chr6 (7 HSPs)
chr6 (336-386)||(3825529-3825580)
chr6 (337-386)||(29074372-29074422)
chr6 (337-386)||(29079136-29079186)
chr6 (337-386)||(29106945-29106995)
chr6 (337-388)||(10039679-10039731)
chr6 (337-382)||(30388065-30388111)
chr6 (347-386)||(33974299-33974339)
[»] chr2 (12 HSPs)
chr2 (332-386)||(16911269-16911324)
chr2 (337-386)||(19141447-19141497)
chr2 (337-386)||(5378664-5378715)
chr2 (337-386)||(8851151-8851202)
chr2 (337-386)||(17850981-17851032)
chr2 (337-386)||(20347464-20347515)
chr2 (337-386)||(30190926-30190977)
chr2 (337-386)||(37720207-37720258)
chr2 (337-386)||(41790912-41790963)
chr2 (337-386)||(32673143-32673193)
chr2 (337-382)||(43495609-43495655)
chr2 (337-388)||(6171454-6171507)
[»] scaffold0110 (1 HSPs)
scaffold0110 (337-386)||(45807-45857)
[»] scaffold0069 (1 HSPs)
scaffold0069 (337-386)||(50507-50557)
[»] chr5 (16 HSPs)
chr5 (337-386)||(22428937-22428987)
chr5 (337-386)||(22729440-22729490)
chr5 (337-385)||(9665828-9665876)
chr5 (347-386)||(11350822-11350861)
chr5 (337-386)||(12498570-12498621)
chr5 (337-386)||(12498928-12498979)
chr5 (337-386)||(21207229-21207280)
chr5 (337-386)||(26571164-26571215)
chr5 (337-386)||(34576870-34576920)
chr5 (337-386)||(37610205-37610255)
chr5 (337-386)||(37780323-37780373)
chr5 (337-386)||(43463759-43463809)
chr5 (337-386)||(19514528-19514580)
chr5 (337-384)||(31569910-31569958)
chr5 (337-384)||(37610620-37610668)
chr5 (337-384)||(43464194-43464242)
[»] chr7 (17 HSPs)
chr7 (337-385)||(6908485-6908534)
chr7 (337-374)||(27096050-27096087)
chr7 (337-374)||(27182216-27182253)
chr7 (328-386)||(10533028-10533088)
chr7 (337-386)||(3687656-3687707)
chr7 (337-386)||(9035293-9035344)
chr7 (337-386)||(9412325-9412376)
chr7 (337-386)||(20418891-20418942)
chr7 (337-386)||(37888836-37888887)
chr7 (337-386)||(37889259-37889310)
chr7 (337-386)||(37972396-37972447)
chr7 (337-386)||(3204672-3204721)
chr7 (337-386)||(13744233-13744283)
chr7 (327-384)||(18864404-18864462)
chr7 (337-386)||(22740591-22740641)
chr7 (337-379)||(42419037-42419079)
chr7 (337-386)||(48359323-48359373)
[»] chr8 (6 HSPs)
chr8 (337-386)||(765737-765788)
chr8 (337-386)||(25438795-25438846)
chr8 (337-386)||(41662403-41662454)
chr8 (337-386)||(13936726-13936776)
chr8 (337-384)||(12281127-12281176)
chr8 (337-384)||(43162237-43162285)
[»] scaffold0460 (1 HSPs)
scaffold0460 (337-386)||(763-813)
[»] scaffold0319 (1 HSPs)
scaffold0319 (337-386)||(6697-6747)
[»] scaffold0002 (1 HSPs)
scaffold0002 (337-386)||(411926-411976)
[»] scaffold0001 (1 HSPs)
scaffold0001 (337-386)||(183663-183713)
[»] scaffold0015 (1 HSPs)
scaffold0015 (337-384)||(17158-17206)


Alignment Details
Target: scaffold0598 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 17 - 385
Target Start/End: Complemental strand, 7243 - 6877
Alignment:
Q  17 gtatactggagttggagagtgttttcaagctctgttgatttcaagttgaaaagagtttaaggtttatataatgggaactgtgtggatgccatctaaacca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||      
T  7243 gtatactggagttggagagtgttttcaagctctgttgatttcaagttgaaaagagtttaaggtttatataatgggaactgtgtagatgccatctaaac-- 7146  T
Q  117 aagtttaacaagttcctaattaataatattgactggtggtcatgtaattatgatgttggcgatgtctgaaattaatgtaataatatgaaacaaaagtata 216  Q
     ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7145 -agtttaacaggttcctaattaataatattgactggtggtcaagtaattatgatgttggcgatgtctgaaattaatgtaataatatgaaaccaaagtata 7047  T
Q  217 aaatatagaaaatactaacatttgttcttaagggaaatattaatgattttattggtagaaatgtattaaaaattgtagcaannnnnnncactaaaag-tt 315  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||| ||    
T  7046 aaatattgaaaatactaacatttgttcttaagggaaatattaatgattttattggtagaaatgtattaaaaattgtagcaatttttttcactaaaagttt 6947  T
Q  316 gagcataaatattttctaagattaattgcactttcccccctatattttgccaattgtgcattttgcaccc 385  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6946 gagcataaatattttctaagcttaattgcactttcccccctatcttttgccaattgtgcattttgcaccc 6877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 26207364 - 26207414
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  26207364 ttaattgcactttcccccctatagtttgccaattgtgcgattttgcacccc 26207414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 22681578 - 22681628
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacccc 386  Q
    |||||||||||||||||||||| ||||| ||||||||| ||||||||||||    
T  22681578 ttaattgcactttcccccctatcttttgtcaattgtgcgattttgcacccc 22681628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 337 - 385
Target Start/End: Complemental strand, 48406435 - 48406386
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcaccc 385  Q
    ||||||| ||||||||||||||| |||||||||||||| |||||||||||    
T  48406435 ttaattgtactttcccccctataatttgccaattgtgcgattttgcaccc 48406386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 25161881 - 25161932
Alignment:
Q  337 ttaattgcacttt-cccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||||||||||    
T  25161881 ttaattgcacttttcccccctatagtttgccaattgtgcgattttgcacccc 25161932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 28196349 - 28196400
Alignment:
Q  337 ttaattgcacttt-cccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||||||||||    
T  28196349 ttaattgcacttttcccccctataatttgccaattgtgcgattttgcacccc 28196400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 28196824 - 28196773
Alignment:
Q  337 ttaattgcacttt-cccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||||||||||    
T  28196824 ttaattgcacttttcccccctatagtttgccaattgtgcgattttgcacccc 28196773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 32703701 - 32703650
Alignment:
Q  337 ttaattgcacttt-cccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||||||||||    
T  32703701 ttaattgcacttttcccccctatagtttgccaattgtgcgattttgcacccc 32703650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 56505696 - 56505747
Alignment:
Q  337 ttaattgcacttt-cccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| ||||||||| ||||||||||||||| ||||||||||||    
T  56505696 ttaattgcacttttcccccctatcttttgccaattgtgcgattttgcacccc 56505747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 3930530 - 3930480
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| |||||||| |||||| |||||||| ||||||||||||    
T  3930530 ttaattgcacttttccccctatcttttgctaattgtgcgattttgcacccc 3930480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 23539844 - 23539893
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacccc 386  Q
    |||||||||||||||||| |||| |||||||||||||| ||||||||||||    
T  23539844 ttaattgcactttccccc-tatagtttgccaattgtgcgattttgcacccc 23539893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 48405965 - 48406015
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| ||||||||| |||||||||| ||| ||||||||||||    
T  48405965 ttaattgcacttttccccctatagtttgccaattatgcaattttgcacccc 48406015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 383
Target Start/End: Complemental strand, 9380792 - 9380744
Alignment:
Q  337 ttaattgcacttt-cccccctatattttgccaattgtgc-attttgcac 383  Q
    ||||||||||||| |||||||||| |||||||||||||| |||||||||    
T  9380792 ttaattgcacttttcccccctatagtttgccaattgtgcgattttgcac 9380744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 386
Target Start/End: Complemental strand, 26207786 - 26207746
Alignment:
Q  347 tttcccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| |||||||||||||| ||||||||||||    
T  26207786 tttcccccctatagtttgccaattgtgcgattttgcacccc 26207746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Complemental strand, 39415511 - 39415483
Alignment:
Q  399 cgattttgcactccatctttttgccccct 427  Q
    |||||||||||||||||||||||||||||    
T  39415511 cgattttgcactccatctttttgccccct 39415483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 9347601 - 9347551
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  9347601 ttaattgcactttcccccctatagtttgccaattgtgcaattttgcacccc 9347551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 337 - 388
Target Start/End: Original strand, 1176720 - 1176772
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacccctc 388  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||| |||||    
T  1176720 ttaattgcactttcccccctatattttgctaattgtgcgattttgcatccctc 1176772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 44911028 - 44911079
Alignment:
Q  337 ttaattgcactttcccc-cctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  44911028 ttaattgcactttccccccctatattttgccaattgtgcgattttgcacccc 44911079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 17518652 - 17518602
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| |||||||| ||||||||||||||| ||||||||||||    
T  17518652 ttaattgcacttttccccctatcttttgccaattgtgcgattttgcacccc 17518602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 20371403 - 20371353
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| ||||||||| |||||||||||||| ||||||||||||    
T  20371403 ttaattgcacttttccccctatagtttgccaattgtgcgattttgcacccc 20371353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 27172119 - 27172169
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| ||||||||| |||||||||||||| ||||||||||||    
T  27172119 ttaattgcacttttccccctatagtttgccaattgtgcgattttgcacccc 27172169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 382
Target Start/End: Complemental strand, 49318216 - 49318170
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgca 382  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||    
T  49318216 ttaattgcactttcccccctatagtttgccaattgtgcgattttgca 49318170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 337 - 374
Target Start/End: Original strand, 19007738 - 19007775
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc 374  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  19007738 ttaattgcactttcccccctatagtttgccaattgtgc 19007775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 337 - 385
Target Start/End: Complemental strand, 20480662 - 20480613
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcaccc 385  Q
    ||||||||||||| ||||||||| |||||||||||||| |||||||||||    
T  20480662 ttaattgcacttttccccctatagtttgccaattgtgcgattttgcaccc 20480613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 8109044 - 8108993
Alignment:
Q  337 ttaattgcacttt-cccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| ||||||||| ||||||||||||||| ||||||||||||    
T  8109044 ttaattgcacttttcccccctatcttttgccaattgtgcgattttgcacccc 8108993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 9347129 - 9347180
Alignment:
Q  337 ttaattgcacttt-cccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||||||||||    
T  9347129 ttaattgcacttttcccccctatagtttgccaattgtgcgattttgcacccc 9347180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 32163094 - 32163043
Alignment:
Q  337 ttaattgcacttt-cccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||||||||||    
T  32163094 ttaattgcacttttcccccctatagtttgccaattgtgcgattttgcacccc 32163043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 39692051 - 39692000
Alignment:
Q  337 ttaattgcacttt-cccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| ||||||||||||||| ||||||||| ||||||||||||    
T  39692051 ttaattgcacttttcccccctatattttgtcaattgtgcgattttgcacccc 39692000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 47955309 - 47955360
Alignment:
Q  337 ttaattgcacttt-cccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| ||||||||| ||||||||||||||| ||||||||||||    
T  47955309 ttaattgcacttttcccccctatcttttgccaattgtgcgattttgcacccc 47955360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 50430132 - 50430081
Alignment:
Q  337 ttaattgcacttt-cccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||||||||||    
T  50430132 ttaattgcacttttcccccctatagtttgccaattgtgcgattttgcacccc 50430081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 13589709 - 13589659
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| |||||||| |||||| |||||||| ||||||||||||    
T  13589709 ttaattgcacttttccccctatcttttgctaattgtgcgattttgcacccc 13589659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 20480171 - 20480221
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| ||||||||| |||| ||||||||| ||||||||||||    
T  20480171 ttaattgcacttttccccctatagtttgtcaattgtgcgattttgcacccc 20480221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 375
Target Start/End: Original strand, 49317755 - 49317793
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgca 375  Q
    ||||||||||||| ||||||||| |||||||||||||||    
T  49317755 ttaattgcacttttccccctatagtttgccaattgtgca 49317793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 50615671 - 50615621
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| ||||||||| |||| ||||||||| ||||||||||||    
T  50615671 ttaattgcacttttccccctatagtttgtcaattgtgcgattttgcacccc 50615621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 50623499 - 50623449
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| ||||||||| |||| ||||||||| ||||||||||||    
T  50623499 ttaattgcacttttccccctatagtttgtcaattgtgcgattttgcacccc 50623449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 383
Target Start/End: Original strand, 46823846 - 46823894
Alignment:
Q  337 ttaattgcacttt-cccccctatattttgccaattgtgc-attttgcac 383  Q
    ||||||||||||| |||||||||| |||||||||||||| |||||||||    
T  46823846 ttaattgcacttttcccccctatagtttgccaattgtgcgattttgcac 46823894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 337 - 385
Target Start/End: Complemental strand, 8315132 - 8315083
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcaccc 385  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  8315132 ttaattgcactttcccccctatattttgtcaattgtgcgattttgcaccc 8315083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 42672981 - 42673031
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| ||||||||| |||||||||||||| ||||||||||||    
T  42672981 ttaattgcacttttccccctatagtttgccaattgtgcgattttgcacccc 42673031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 387
Target Start/End: Complemental strand, 20969070 - 20969018
Alignment:
Q  337 ttaattgcacttt-cccccctatattttgccaattgtgc-attttgcacccct 387  Q
    ||||||||||||| ||||||||| ||||||||||||||| |||||||||||||    
T  20969070 ttaattgcacttttcccccctatcttttgccaattgtgcgattttgcacccct 20969018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 47666386 - 47666335
Alignment:
Q  337 ttaattgcacttt-cccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||||||||||    
T  47666386 ttaattgcacttttcccccctatagtttgccaattgtgcaattttgcacccc 47666335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 48159900 - 48159951
Alignment:
Q  337 ttaattgcacttt-cccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||||||||||    
T  48159900 ttaattgcacttttcccccctatagtttgccaattgtgcgattttgcacccc 48159951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 48160384 - 48160333
Alignment:
Q  337 ttaattgcactttcccccc-tatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||||||||| |||| |||||||||||||| ||||||||||||    
T  48160384 ttaattgcactttccccccctatagtttgccaattgtgcgattttgcacccc 48160333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 383
Target Start/End: Complemental strand, 53688353 - 53688306
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcac 383  Q
    |||||||||||||| |||||||| |||||||||||||| |||||||||    
T  53688353 ttaattgcactttctcccctatagtttgccaattgtgcgattttgcac 53688306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 1928484 - 1928434
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||| ||||| |||||| ||||||||||||||| ||||||||||||    
T  1928484 ttaattgcattttcctccctatcttttgccaattgtgcgattttgcacccc 1928434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 3353131 - 3353181
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| ||||||||| |||| ||||||||| ||||||||||||    
T  3353131 ttaattgcacttttccccctatagtttgtcaattgtgcgattttgcacccc 3353181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 22429646 - 22429596
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacccc 386  Q
    |||||||||||||||| |||||| |||| ||||||||| ||||||||||||    
T  22429646 ttaattgcactttccctcctatagtttgtcaattgtgcgattttgcacccc 22429596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 24485510 - 24485460
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| | ||||||| |||||||||||||| ||||||||||||    
T  24485510 ttaattgcacttttctccctatagtttgccaattgtgcgattttgcacccc 24485460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 26007185 - 26007235
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||| ||||||||||||| |||| ||||||||| ||||||||||||    
T  26007185 ttaattgcattttcccccctatagtttgtcaattgtgcgattttgcacccc 26007235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 40848524 - 40848574
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| ||||||||| |||||||||||||| ||||| ||||||    
T  40848524 ttaattgcacttttccccctatagtttgccaattgtgcgattttacacccc 40848574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 42673346 - 42673296
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| ||||||||| |||| ||||||||| ||||||||||||    
T  42673346 ttaattgcacttttccccctatagtttgtcaattgtgcgattttgcacccc 42673296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 47871172 - 47871122
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| |||||||| |||||| |||||||| ||||||||||||    
T  47871172 ttaattgcacttttccccctatcttttgctaattgtgcgattttgcacccc 47871122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 384
Target Start/End: Complemental strand, 3353597 - 3353553
Alignment:
Q  341 ttgcactttcccccctatattttgccaattgtgc-attttgcacc 384  Q
    ||||||||| ||||||||| |||||||||||||| ||||||||||    
T  3353597 ttgcacttttccccctatagtttgccaattgtgcgattttgcacc 3353553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 386
Target Start/End: Original strand, 3825529 - 3825580
Alignment:
Q  336 attaattgcactttcccccctatattttgccaattgtgc-attttgcacccc 386  Q
    |||||||||||||| ||||||||||||||| |||||||| ||||||||||||    
T  3825529 attaattgcacttttccccctatattttgctaattgtgcgattttgcacccc 3825580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 29074422 - 29074372
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacccc 386  Q
    |||||||| |||||||||||||| |||||||||||||| ||||||||||||    
T  29074422 ttaattgctctttcccccctatagtttgccaattgtgcgattttgcacccc 29074372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 29079186 - 29079136
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacccc 386  Q
    |||||||| |||||||||||||| |||||||||||||| ||||||||||||    
T  29079186 ttaattgctctttcccccctatagtttgccaattgtgcgattttgcacccc 29079136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 29106995 - 29106945
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacccc 386  Q
    |||||||| |||||||||||||| |||||||||||||| ||||||||||||    
T  29106995 ttaattgctctttcccccctatagtttgccaattgtgcgattttgcacccc 29106945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 388
Target Start/End: Original strand, 10039679 - 10039731
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacccctc 388  Q
    ||||||||||||| |||||||| |||||| |||||||| ||||||||||||||    
T  10039679 ttaattgcacttttccccctatcttttgctaattgtgcgattttgcacccctc 10039731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 30388065 - 30388111
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgca 382  Q
    |||||||||||||||||||||| |||||| |||||||| ||||||||    
T  30388065 ttaattgcactttcccccctatcttttgctaattgtgcgattttgca 30388111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 386
Target Start/End: Complemental strand, 33974339 - 33974299
Alignment:
Q  347 tttcccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| |||||||||||||| ||||||||||||    
T  33974339 tttcccccctatagtttgccaattgtgcgattttgcacccc 33974299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 386
Target Start/End: Complemental strand, 16911324 - 16911269
Alignment:
Q  332 taagattaattgcactttcccccctatattttgccaattgtgc-attttgcacccc 386  Q
    |||| |||||||||||||| |||||||| |||||||||||||| ||||||||||||    
T  16911324 taagcttaattgcactttcgcccctatagtttgccaattgtgcgattttgcacccc 16911269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 19141447 - 19141497
Alignment:
Q  337 ttaattgcactttc-ccccctatattttgccaattgtgcattttgcacccc 386  Q
    |||||||||||||  ||||||||| ||||||||||||||||||||||||||    
T  19141447 ttaattgcactttttccccctatagtttgccaattgtgcattttgcacccc 19141497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 5378664 - 5378715
Alignment:
Q  337 ttaattgcacttt-cccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||||||||||    
T  5378664 ttaattgcacttttcccccctatagtttgccaattgtgcgattttgcacccc 5378715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 8851151 - 8851202
Alignment:
Q  337 ttaattgcacttt-cccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||||||||||    
T  8851151 ttaattgcacttttcccccctatagtttgccaattgtgcgattttgcacccc 8851202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 17850981 - 17851032
Alignment:
Q  337 ttaattgcacttt-cccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||||||||||    
T  17850981 ttaattgcacttttcccccctatagtttgccaattgtgcgattttgcacccc 17851032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 20347515 - 20347464
Alignment:
Q  337 ttaattgcacttt-cccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| ||||||||| ||||||||||||||| ||||||||||||    
T  20347515 ttaattgcacttttcccccctatcttttgccaattgtgcgattttgcacccc 20347464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 30190926 - 30190977
Alignment:
Q  337 ttaattgcacttt-cccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| ||||||||| ||||||||||||||| ||||||||||||    
T  30190926 ttaattgcacttttcccccctatcttttgccaattgtgcgattttgcacccc 30190977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 37720207 - 37720258
Alignment:
Q  337 ttaattgcacttt-cccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||||||||||    
T  37720207 ttaattgcacttttcccccctatagtttgccaattgtgcgattttgcacccc 37720258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 41790963 - 41790912
Alignment:
Q  337 ttaattgcacttt-cccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||| ||||    
T  41790963 ttaattgcacttttcccccctatattttgccaattgtgcgattttgcccccc 41790912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 32673193 - 32673143
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacccc 386  Q
    |||||||||||||  ||||||| ||||||||||||||| ||||||||||||    
T  32673193 ttaattgcactttttcccctatcttttgccaattgtgcgattttgcacccc 32673143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 382
Target Start/End: Complemental strand, 43495655 - 43495609
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgca 382  Q
    |||||||||||||||| |||||||||||| |||||||| ||||||||    
T  43495655 ttaattgcactttcccacctatattttgctaattgtgcgattttgca 43495609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 388
Target Start/End: Complemental strand, 6171507 - 6171454
Alignment:
Q  337 ttaattgcacttt-cccccctatattttgccaattgt-gcattttgcacccctc 388  Q
    ||||||||||||| ||||||||| ||||||||||||| | ||||||||||||||    
T  6171507 ttaattgcacttttcccccctatcttttgccaattgtgggattttgcacccctc 6171454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 45857 - 45807
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| |||||||| ||||||||||||||| ||||||||||||    
T  45857 ttaattgcacttttccccctatcttttgccaattgtgcgattttgcacccc 45807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 50557 - 50507
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| ||||||||| |||||||||||||| ||||||||||||    
T  50557 ttaattgcacttttccccctatagtttgccaattgtgcgattttgcacccc 50507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 22428937 - 22428987
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacccc 386  Q
    |||||||||||||||||||||| |||||| |||||||| ||||||||||||    
T  22428937 ttaattgcactttcccccctatcttttgctaattgtgcgattttgcacccc 22428987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 22729490 - 22729440
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| ||||||||| |||||||||||||| ||||||||||||    
T  22729490 ttaattgcacttttccccctataatttgccaattgtgcgattttgcacccc 22729440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 385
Target Start/End: Complemental strand, 9665876 - 9665828
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgcattttgcaccc 385  Q
    |||||| |||||| |||||||| |||||| |||||||||||||||||||    
T  9665876 ttaattccacttttccccctatcttttgctaattgtgcattttgcaccc 9665828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 386
Target Start/End: Original strand, 11350822 - 11350861
Alignment:
Q  347 tttcccccctatattttgccaattgtgcattttgcacccc 386  Q
    |||| ||||||| |||||||||||||||||||||||||||    
T  11350822 tttcacccctatcttttgccaattgtgcattttgcacccc 11350861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 12498570 - 12498621
Alignment:
Q  337 ttaattgcacttt-cccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||||||||||    
T  12498570 ttaattgcacttttcccccctatagtttgccaattgtgcgattttgcacccc 12498621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 12498979 - 12498928
Alignment:
Q  337 ttaattgcacttt-cccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||||||||||    
T  12498979 ttaattgcacttttcccccctatagtttgccaattgtgcgattttgcacccc 12498928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 21207229 - 21207280
Alignment:
Q  337 ttaattgcacttt-cccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||||||||||    
T  21207229 ttaattgcacttttcccccctatagtttgccaattgtgcgattttgcacccc 21207280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 26571215 - 26571164
Alignment:
Q  337 ttaattgcacttt-cccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||||||||||    
T  26571215 ttaattgcacttttcccccctatagtttgccaattgtgcgattttgcacccc 26571164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 34576870 - 34576920
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacccc 386  Q
    |||||||||||||||||||||| |||||| |||||||| ||||| ||||||    
T  34576870 ttaattgcactttcccccctatcttttgctaattgtgcgattttacacccc 34576920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 37610205 - 37610255
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtg-cattttgcacccc 386  Q
    ||||||||||||| ||||||||| |||||||||||||  ||||||||||||    
T  37610205 ttaattgcacttttccccctatagtttgccaattgtgtgattttgcacccc 37610255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 37780323 - 37780373
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtg-cattttgcacccc 386  Q
    ||||||||||||| ||||||||| |||||||||||||  ||||||||||||    
T  37780323 ttaattgcacttttccccctatagtttgccaattgtgtgattttgcacccc 37780373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 43463759 - 43463809
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| |||| |||| |||||||||||||| ||||||||||||    
T  43463759 ttaattgcacttttccccttatagtttgccaattgtgcgattttgcacccc 43463809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 19514528 - 19514580
Alignment:
Q  337 ttaattgcactttcccccc--tatattttgccaattgtgc-attttgcacccc 386  Q
    |||||||||||||||||||  |||| |||||||||||||| ||||||||||||    
T  19514528 ttaattgcactttcccccccctatagtttgccaattgtgcgattttgcacccc 19514580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 384
Target Start/End: Original strand, 31569910 - 31569958
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacc 384  Q
    ||||||||||||| |||||||| ||||| ||||||||| ||||||||||    
T  31569910 ttaattgcacttttccccctatcttttgtcaattgtgcgattttgcacc 31569958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 384
Target Start/End: Complemental strand, 37610668 - 37610620
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacc 384  Q
    ||||||| ||||||||||||||| ||||| |||||||| ||||||||||    
T  37610668 ttaattgtactttcccccctatagtttgctaattgtgcgattttgcacc 37610620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 384
Target Start/End: Complemental strand, 43464242 - 43464194
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacc 384  Q
    ||||||||||||| ||||||||| |||| ||||||||| ||||||||||    
T  43464242 ttaattgcacttttccccctatagtttgtcaattgtgcgattttgcacc 43464194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 337 - 385
Target Start/End: Complemental strand, 6908534 - 6908485
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcaccc 385  Q
    |||||||||||||||||||||| |||||| |||||||| |||||||||||    
T  6908534 ttaattgcactttcccccctattttttgctaattgtgcgattttgcaccc 6908485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 337 - 374
Target Start/End: Original strand, 27096050 - 27096087
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc 374  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  27096050 ttaattgcactttcccccctatattttgctaattgtgc 27096087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 337 - 374
Target Start/End: Complemental strand, 27182253 - 27182216
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc 374  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  27182253 ttaattgcactttcccccctatattttgctaattgtgc 27182216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 386
Target Start/End: Original strand, 10533028 - 10533088
Alignment:
Q  328 tttctaagattaattgcacttt-cccccctatattttgccaattgtgc-attttgcacccc 386  Q
    |||||| | ||||||||||||| |||||||||| |||||||||||||| ||||||||||||    
T  10533028 tttctaggcttaattgcacttttcccccctatagtttgccaattgtgcgattttgcacccc 10533088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 3687707 - 3687656
Alignment:
Q  337 ttaattgcacttt-cccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| ||||||||| ||||||||||||||| ||||||||||||    
T  3687707 ttaattgcacttttcccccctatcttttgccaattgtgcgattttgcacccc 3687656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 9035344 - 9035293
Alignment:
Q  337 ttaattgcacttt-cccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||||||||||    
T  9035344 ttaattgcacttttcccccctatagtttgccaattgtgcgattttgcacccc 9035293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 9412376 - 9412325
Alignment:
Q  337 ttaattgcacttt-cccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| ||||||||| ||||||||||||||| ||||||||||||    
T  9412376 ttaattgcacttttcccccctatcttttgccaattgtgcgattttgcacccc 9412325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 20418891 - 20418942
Alignment:
Q  337 ttaattgcacttt-cccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||||||||||    
T  20418891 ttaattgcacttttcccccctatagtttgccaattgtgcgattttgcacccc 20418942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 37888836 - 37888887
Alignment:
Q  337 ttaattgcacttt-cccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||||||||||    
T  37888836 ttaattgcacttttcccccctatagtttgccaattgtgcgattttgcacccc 37888887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 37889310 - 37889259
Alignment:
Q  337 ttaattgcacttt-cccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||||||||||    
T  37889310 ttaattgcacttttcccccctatagtttgccaattgtgcgattttgcacccc 37889259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 37972447 - 37972396
Alignment:
Q  337 ttaattgcacttt-cccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||||||||||    
T  37972447 ttaattgcacttttcccccctatagtttgccaattgtgcgattttgcacccc 37972396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 3204672 - 3204721
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacccc 386  Q
    |||||||||||||||||| |||| |||||||||||||| ||||||||||||    
T  3204672 ttaattgcactttccccc-tatagtttgccaattgtgcgattttgcacccc 3204721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 13744283 - 13744233
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| ||||||||| |||| ||||||||| ||||||||||||    
T  13744283 ttaattgcacttttccccctatagtttgtcaattgtgcgattttgcacccc 13744233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 384
Target Start/End: Complemental strand, 18864462 - 18864404
Alignment:
Q  327 ttttctaagattaattgcactttcccccctatattttgccaattgtgc-attttgcacc 384  Q
    ||||||| | ||||||| ||||| ||||||||| |||||||||||||| ||||||||||    
T  18864462 ttttctaggcttaattgtacttttccccctatagtttgccaattgtgcgattttgcacc 18864404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 22740641 - 22740591
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| ||||||||| |||| ||||||||| ||||||||||||    
T  22740641 ttaattgcacttttccccctatagtttgtcaattgtgcgattttgcacccc 22740591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 379
Target Start/End: Complemental strand, 42419079 - 42419037
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgcatttt 379  Q
    ||||||||||||| ||||||||| |||||||||||||| ||||    
T  42419079 ttaattgcacttttccccctatagtttgccaattgtgcgtttt 42419037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 48359323 - 48359373
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| ||||||||| |||| ||||||||| ||||||||||||    
T  48359323 ttaattgcacttttccccctatagtttgtcaattgtgcgattttgcacccc 48359373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 765737 - 765788
Alignment:
Q  337 ttaattgcacttt-cccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| ||||||||| ||||||||||||||| ||||||||||||    
T  765737 ttaattgcacttttcccccctatcttttgccaattgtgcgattttgcacccc 765788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 25438795 - 25438846
Alignment:
Q  337 ttaattgcacttt-cccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||||||||||    
T  25438795 ttaattgcacttttcccccctatagtttgccaattgtgcgattttgcacccc 25438846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 41662454 - 41662403
Alignment:
Q  337 ttaattgcacttt-cccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| ||||||||| ||||||||||||||| ||||||||||||    
T  41662454 ttaattgcacttttcccccctatcttttgccaattgtgcgattttgcacccc 41662403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 13936726 - 13936776
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| |||||||| |||| |||||||||| ||||||||||||    
T  13936726 ttaattgcacttttccccctatcttttaccaattgtgcgattttgcacccc 13936776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 384
Target Start/End: Original strand, 12281127 - 12281176
Alignment:
Q  337 ttaattgcacttt-cccccctatattttgccaattgtgc-attttgcacc 384  Q
    ||||||||||||| ||||||||| ||||||||||||||| ||||||||||    
T  12281127 ttaattgcacttttcccccctatcttttgccaattgtgcgattttgcacc 12281176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 384
Target Start/End: Original strand, 43162237 - 43162285
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacc 384  Q
    ||||||||||||| ||||||||||||||  |||||||| ||||||||||    
T  43162237 ttaattgcacttttccccctatattttgttaattgtgcgattttgcacc 43162285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0460 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 813 - 763
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacccc 386  Q
    |||||||||||||  |||||||| |||||||||||||| ||||||||||||    
T  813 ttaattgcactttttcccctatagtttgccaattgtgcgattttgcacccc 763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 6747 - 6697
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| |||||||| |||||| |||||||| ||||||||||||    
T  6747 ttaattgcacttttccccctatcttttgctaattgtgcgattttgcacccc 6697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 411926 - 411976
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacccc 386  Q
    ||||||||||||| |||||||| ||||| ||||||||| ||||||||||||    
T  411926 ttaattgcactttaccccctatcttttgtcaattgtgcgattttgcacccc 411976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 183713 - 183663
Alignment:
Q  337 ttaattgcacttt-cccccctatattttgccaattgtgcattttgcacccc 386  Q
    ||||||||||||| |||||||||||||||| ||||||||  ||||||||||    
T  183713 ttaattgcacttttcccccctatattttgctaattgtgcgatttgcacccc 183663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 384
Target Start/End: Complemental strand, 17206 - 17158
Alignment:
Q  337 ttaattgcactttcccccctatattttgccaattgtgc-attttgcacc 384  Q
    ||||||||||||| |||||||| |||||| |||||||| ||||||||||    
T  17206 ttaattgcacttttccccctatcttttgctaattgtgcaattttgcacc 17158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University