View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_low_29 (Length: 438)
Name: NF12598_low_29
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Original strand, 41222860 - 41223274
Alignment:
| Q |
1 |
aagggtctagagaaggaagaagaggttcatcaaatgggtttgaattttgttgagaagttacttcattagtactgtgatgagaattggtgaaaaaagggaa |
100 |
Q |
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| T |
41222860 |
aagggtctagagaaggaagaagaggttcatcaaatgggtttgaattttgttgagaagttacttcattagtactgtgatgagaattggtgaaaaaagggaa |
41222959 |
T |
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| Q |
101 |
agagtctgagaaaaatggaaggtctccacttccatcatttgaagagactatttctgaggttgaatgtgtgtggaaagttgtggtgccgaatgaatatagt |
200 |
Q |
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| T |
41222960 |
agagtctgagaaaaatggaaggtctccacttccatcatttgaagagactatttctgaggttgaatgtgtgtggaaagttgtggtgccgaatgaatatagt |
41223059 |
T |
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| Q |
201 |
tccgaagacatagaatcgaaaaattctattgaattgaattgaactcctttttaatgtgaatcaatatcctgcctctgcgcacgactgcagagactaatta |
300 |
Q |
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| T |
41223060 |
tccgaagacatagaatcaaaaaattct-----attgaattgaactcctttttaatgtgaatcagtatccagcctttgcgcacgactgcagagactaattc |
41223154 |
T |
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| Q |
301 |
ctcgaaccggataggatcacaaagggatcaaatctctccctctgagtattttgtttgtgaagctacactttggactgaatgatggtaatccttgttgaac |
400 |
Q |
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| T |
41223155 |
ctcgaaccggataggatcacaaa-ggatcaaatctctccctctgagtattttctttgtgaagctacactttggactgaatgatggtaatccttgttgaac |
41223253 |
T |
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| Q |
401 |
aaggagacaaaagtggtactt |
421 |
Q |
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| T |
41223254 |
aaggagacaaaagtggtactt |
41223274 |
T |
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