View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12598_low_30 (Length: 437)
Name: NF12598_low_30
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_30 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 178; Significance: 7e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 111 - 424
Target Start/End: Complemental strand, 39937209 - 39936883
Alignment:
| Q |
111 |
aaaacgcagccccttcaatagttcacaca--ttcaaagaagtatg--aatagagaatagaaaaaagaagggtgttccatgtcaatggttgctgcgaatct |
206 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39937209 |
aaaacgcagccccttcaatagttcacacacattcaaagaagtatggaaacatagaatagaaaaaagaagggtgttccatgtcaatggttgctgcgaatct |
39937110 |
T |
|
| Q |
207 |
gggaaactgaaaatgaaagtaacactgtaaaagtattgg---------ctctataaaataatttaaatcattgaatatcatgagtatataagcgctctgc |
297 |
Q |
| |
|
||||| ||||||||||||||| || ||||||||||||| || ||||| |||| | || | ||||||||||||||||||||||||||| |
|
|
| T |
39937109 |
aggaaagtgaaaatgaaagtaaaaccgtaaaagtattgggtgctggcactatataagataagatctataaaataatatcatgagtatataagcgctctgc |
39937010 |
T |
|
| Q |
298 |
ataacacaacttaatgtccactggcatccaaacatattatcatgaacatcacgaacgcaaaatcaatttttagatctaaatttaaaatttaaaataagtt |
397 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
39937009 |
ataatacaacttaatgtccactggcatctaaacatattatcatgaatatcacgaacgcaaaatcaa-ttttagatctaaatttaaaatttaaaatgagtt |
39936911 |
T |
|
| Q |
398 |
tggcttgcta-tatgtccttctgtgctc |
424 |
Q |
| |
|
|||||||||| ||||||||||||||||| |
|
|
| T |
39936910 |
tggcttgctattatgtccttctgtgctc |
39936883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 29 - 115
Target Start/End: Complemental strand, 39937477 - 39937392
Alignment:
| Q |
29 |
aattcaaacattcatattaacacttttaagtgaaaattaatgggataaacccaataaattcagacattgataatcaatgaagaaaac |
115 |
Q |
| |
|
|||| |||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39937477 |
aatttaaacattcatatta-cttttttaagtgcaaattaatgggataaacccaataaattcagacattgataatcaatgaagaaaac |
39937392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University